miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 170375 0.71 0.914513
Target:  5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3'
miRNA:   3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 169444 0.71 0.914513
Target:  5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3'
miRNA:   3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 168639 1.03 0.020065
Target:  5'- uCAAAGCCAAACUGUCGGCCAAGC-CCa -3'
miRNA:   3'- -GUUUCGGUUUGACAGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 168598 0.75 0.719172
Target:  5'- --uGGCCugGAACUGUCggaaggagGGCCuGGCUCCg -3'
miRNA:   3'- guuUCGG--UUUGACAG--------CCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 168512 0.71 0.914513
Target:  5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3'
miRNA:   3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 167580 0.71 0.914513
Target:  5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3'
miRNA:   3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 165789 0.66 0.992564
Target:  5'- uCAGAGCCAcGgUGgcaCGGCCGgcuaggggGGCgUCCc -3'
miRNA:   3'- -GUUUCGGUuUgACa--GCCGGU--------UCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 165473 0.71 0.908345
Target:  5'- gAAGGCCAGGCaGaaGGCCAGGauugUCCa -3'
miRNA:   3'- gUUUCGGUUUGaCagCCGGUUCg---AGG- -5'
28726 5' -51.2 NC_006146.1 + 160605 0.67 0.985671
Target:  5'- ---uGCCcccgagGUCGGCCGccuggcaugccAGCUCCg -3'
miRNA:   3'- guuuCGGuuuga-CAGCCGGU-----------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 158190 0.72 0.866183
Target:  5'- --uGGCCGucagGACccccuUGUCaauGGCCAGGCUCCu -3'
miRNA:   3'- guuUCGGU----UUG-----ACAG---CCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 157963 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 157724 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 156919 0.7 0.941537
Target:  5'- cCGAGGCCuGGgUGgCGGCgcugaCGGGCUCCg -3'
miRNA:   3'- -GUUUCGGuUUgACaGCCG-----GUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 155723 0.69 0.962299
Target:  5'- --cGGCCGcGCaGUCGGCCuucAGCgcuUCCa -3'
miRNA:   3'- guuUCGGUuUGaCAGCCGGu--UCG---AGG- -5'
28726 5' -51.2 NC_006146.1 + 154885 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 154647 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 153560 0.66 0.991457
Target:  5'- --cGGUgGAGCUGccgUGGUC-AGCUCCg -3'
miRNA:   3'- guuUCGgUUUGACa--GCCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 153388 0.66 0.990223
Target:  5'- --uGGCCGGAUUGUUGaggguGCCAagggAGUUCCc -3'
miRNA:   3'- guuUCGGUUUGACAGC-----CGGU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 152804 0.67 0.987339
Target:  5'- gGAGGCCcgcuGCUcGUCGcGCgAguacAGCUCCa -3'
miRNA:   3'- gUUUCGGuu--UGA-CAGC-CGgU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 151905 0.68 0.977281
Target:  5'- gGGGGCCcccACUGg-GGUCuGGCUCCg -3'
miRNA:   3'- gUUUCGGuu-UGACagCCGGuUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.