miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 42065 0.66 0.758601
Target:  5'- gCCugGcCgGGCuuaCCUGCUCCUGGa- -3'
miRNA:   3'- -GGugUuGgCCGug-GGGCGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 32923 0.66 0.758601
Target:  5'- cCCACcccGCCGGC-CCCCGggaggCCcGGCc -3'
miRNA:   3'- -GGUGu--UGGCCGuGGGGCga---GGaCCGc -5'
28728 3' -61.2 NC_006146.1 + 18369 0.66 0.758601
Target:  5'- -gGCAugCu-CACCCUGgUCCUGGUGg -3'
miRNA:   3'- ggUGUugGccGUGGGGCgAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 68040 0.66 0.758601
Target:  5'- gCCACGACCaGGUGgCggCUGC-CCUGGCu -3'
miRNA:   3'- -GGUGUUGG-CCGUgG--GGCGaGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 31539 0.66 0.758601
Target:  5'- -aACAGCaGGCACCCC-C-CCcGGCGc -3'
miRNA:   3'- ggUGUUGgCCGUGGGGcGaGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 42718 0.66 0.758601
Target:  5'- cCCGCucggGCUGGCAgCCgCGgaUCCgGGCGg -3'
miRNA:   3'- -GGUGu---UGGCCGUgGG-GCg-AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 93982 0.66 0.758601
Target:  5'- uUCAC--CCGGCugcaGCCCCGCggucaccUCUGGCu -3'
miRNA:   3'- -GGUGuuGGCCG----UGGGGCGa------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 4898 0.66 0.753135
Target:  5'- cCCACAACCGcauGCAuCCCUacucuuuggaucccuGCUCCuccucgUGGCa -3'
miRNA:   3'- -GGUGUUGGC---CGU-GGGG---------------CGAGG------ACCGc -5'
28728 3' -61.2 NC_006146.1 + 97386 0.66 0.749471
Target:  5'- gCCAUgcaaaaaguaAGCCuGCgcgugACCCCGCgCCUGGUGc -3'
miRNA:   3'- -GGUG----------UUGGcCG-----UGGGGCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 39380 0.66 0.749471
Target:  5'- cCCAC--UCGGCGCCCgGUUacCCUGGg- -3'
miRNA:   3'- -GGUGuuGGCCGUGGGgCGA--GGACCgc -5'
28728 3' -61.2 NC_006146.1 + 106249 0.66 0.749471
Target:  5'- aCCACGGCgaCGuGCcccugGCCCCGgcggaagacaucCUCCUGGCc -3'
miRNA:   3'- -GGUGUUG--GC-CG-----UGGGGC------------GAGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 19577 0.66 0.749471
Target:  5'- aCCucuCGGuCCGGCGCgaggaCaGCUCCUGGCc -3'
miRNA:   3'- -GGu--GUU-GGCCGUGg----GgCGAGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 108211 0.66 0.749471
Target:  5'- gCuuGACCGcacGCACCgCGCgCUUGGCGg -3'
miRNA:   3'- gGugUUGGC---CGUGGgGCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 123907 0.66 0.749471
Target:  5'- gCCGCuGCCGGU-CCgacgggCGCaauUCCUGGCGg -3'
miRNA:   3'- -GGUGuUGGCCGuGGg-----GCG---AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 124730 0.66 0.749471
Target:  5'- gCCGCucuCUGGCcccACCCgaGUUCCUGGgGc -3'
miRNA:   3'- -GGUGuu-GGCCG---UGGGg-CGAGGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 129638 0.66 0.740247
Target:  5'- uCCGCGGgCGcGUGCUCCGC-CCgggaaUGGCGa -3'
miRNA:   3'- -GGUGUUgGC-CGUGGGGCGaGG-----ACCGC- -5'
28728 3' -61.2 NC_006146.1 + 25504 0.66 0.740247
Target:  5'- gCUACAACCccUACCCCaagaGCaCCUGGCGc -3'
miRNA:   3'- -GGUGUUGGccGUGGGG----CGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 162392 0.66 0.740247
Target:  5'- cCCGCGcCCGGgACCCCGgugggCCaggaUGGUGg -3'
miRNA:   3'- -GGUGUuGGCCgUGGGGCga---GG----ACCGC- -5'
28728 3' -61.2 NC_006146.1 + 98439 0.66 0.740247
Target:  5'- cCCAgAACCGGUuucgGCgCCGC-CCgggGGCc -3'
miRNA:   3'- -GGUgUUGGCCG----UGgGGCGaGGa--CCGc -5'
28728 3' -61.2 NC_006146.1 + 76055 0.66 0.740247
Target:  5'- cCCugAACCcaccaaCACCCaCGCUCCcucauuuuuUGGCGu -3'
miRNA:   3'- -GGugUUGGcc----GUGGG-GCGAGG---------ACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.