miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 3715 0.66 0.801447
Target:  5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3'
miRNA:   3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 2783 0.66 0.801447
Target:  5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3'
miRNA:   3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 1851 0.66 0.801447
Target:  5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3'
miRNA:   3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 919 0.66 0.801447
Target:  5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3'
miRNA:   3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 157893 0.66 0.792709
Target:  5'- -gGCUCGAGAgCUUGGuguccgggaagaGGGUCUUGUg -3'
miRNA:   3'- caUGGGCUCUgGAACC------------CCCGGAGCAg -5'
28730 3' -59.6 NC_006146.1 + 509 0.66 0.792709
Target:  5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3'
miRNA:   3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 1440 0.66 0.792709
Target:  5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3'
miRNA:   3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 2372 0.66 0.792709
Target:  5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3'
miRNA:   3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 3304 0.66 0.792709
Target:  5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3'
miRNA:   3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 124462 0.66 0.783835
Target:  5'- cUACgCCGccGCCUuccUGGGGGCCcccUCGUUc -3'
miRNA:   3'- cAUG-GGCucUGGA---ACCCCCGG---AGCAG- -5'
28730 3' -59.6 NC_006146.1 + 167305 0.66 0.783835
Target:  5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3'
miRNA:   3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5'
28730 3' -59.6 NC_006146.1 + 168237 0.66 0.783835
Target:  5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3'
miRNA:   3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5'
28730 3' -59.6 NC_006146.1 + 169169 0.66 0.783835
Target:  5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3'
miRNA:   3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5'
28730 3' -59.6 NC_006146.1 + 34042 0.66 0.774832
Target:  5'- gGU-CCCGGGGCCUaugccggccGGGGGUCcCGUg -3'
miRNA:   3'- -CAuGGGCUCUGGAa--------CCCCCGGaGCAg -5'
28730 3' -59.6 NC_006146.1 + 142237 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 145315 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 148393 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 151471 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 157627 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 154549 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.