Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 2783 | 0.66 | 0.801447 |
Target: 5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3' miRNA: 3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 1851 | 0.66 | 0.801447 |
Target: 5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3' miRNA: 3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 919 | 0.66 | 0.801447 |
Target: 5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3' miRNA: 3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 3715 | 0.66 | 0.801447 |
Target: 5'- --cCCCGGGACCccGGGcgcgcgccGGCCUccCGUCc -3' miRNA: 3'- cauGGGCUCUGGaaCCC--------CCGGA--GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 3304 | 0.66 | 0.792709 |
Target: 5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3' miRNA: 3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 2372 | 0.66 | 0.792709 |
Target: 5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3' miRNA: 3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 1440 | 0.66 | 0.792709 |
Target: 5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3' miRNA: 3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 509 | 0.66 | 0.792709 |
Target: 5'- --cCCCGAGGCCcccagGGGaGGCC-CGg- -3' miRNA: 3'- cauGGGCUCUGGaa---CCC-CCGGaGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 157893 | 0.66 | 0.792709 |
Target: 5'- -gGCUCGAGAgCUUGGuguccgggaagaGGGUCUUGUg -3' miRNA: 3'- caUGGGCUCUgGAACC------------CCCGGAGCAg -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 124462 | 0.66 | 0.783835 |
Target: 5'- cUACgCCGccGCCUuccUGGGGGCCcccUCGUUc -3' miRNA: 3'- cAUG-GGCucUGGA---ACCCCCGG---AGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167305 | 0.66 | 0.783835 |
Target: 5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3' miRNA: 3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169169 | 0.66 | 0.783835 |
Target: 5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3' miRNA: 3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 168237 | 0.66 | 0.783835 |
Target: 5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3' miRNA: 3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 34042 | 0.66 | 0.774832 |
Target: 5'- gGU-CCCGGGGCCUaugccggccGGGGGUCcCGUg -3' miRNA: 3'- -CAuGGGCUCUGGAa--------CCCCCGGaGCAg -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 142237 | 0.66 | 0.774832 |
Target: 5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3' miRNA: 3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 145315 | 0.66 | 0.774832 |
Target: 5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3' miRNA: 3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 148393 | 0.66 | 0.774832 |
Target: 5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3' miRNA: 3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 151471 | 0.66 | 0.774832 |
Target: 5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3' miRNA: 3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 154549 | 0.66 | 0.774832 |
Target: 5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3' miRNA: 3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 157627 | 0.66 | 0.774832 |
Target: 5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3' miRNA: 3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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