miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28731 5' -63 NC_006146.1 + 47038 0.66 0.660999
Target:  5'- gCCCUGgGUGCgagaaGGGGCCGgucGCCGg -3'
miRNA:   3'- aGGGGCgCACGg----CUCCGGCac-UGGUg -5'
28731 5' -63 NC_006146.1 + 150064 0.66 0.660999
Target:  5'- gUCUCgGCGauggagagGCaggggaaGAGGCCGuUGGCCACc -3'
miRNA:   3'- -AGGGgCGCa-------CGg------CUCCGGC-ACUGGUG- -5'
28731 5' -63 NC_006146.1 + 33336 0.66 0.660999
Target:  5'- -gUCCGgGUGCucCGGGGCagccggGUGGCCGCc -3'
miRNA:   3'- agGGGCgCACG--GCUCCGg-----CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 167239 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 168171 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 169103 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 170035 0.66 0.660035
Target:  5'- cUCCCGCGgccagucccuggaUGUCGGGGagggcCCGgGGCCGCg -3'
miRNA:   3'- aGGGGCGC-------------ACGGCUCC-----GGCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 125077 0.66 0.651343
Target:  5'- aUCCCCGUcu-CCGucuucgaggcGGCCGUGGCgGCg -3'
miRNA:   3'- -AGGGGCGcacGGCu---------CCGGCACUGgUG- -5'
28731 5' -63 NC_006146.1 + 44296 0.66 0.651343
Target:  5'- aCCaCCGCcaaaccgguaguGgggGCUGGGGCCGUGGCaGCc -3'
miRNA:   3'- aGG-GGCG------------Ca--CGGCUCCGGCACUGgUG- -5'
28731 5' -63 NC_006146.1 + 159884 0.66 0.651343
Target:  5'- cUCCUCGCagaggGCCucGAGGCCGgGGCCc- -3'
miRNA:   3'- -AGGGGCGca---CGG--CUCCGGCaCUGGug -5'
28731 5' -63 NC_006146.1 + 55761 0.66 0.651343
Target:  5'- gCCCgGCGgcggGCCaGGGGCagCGaGGCCACc -3'
miRNA:   3'- aGGGgCGCa---CGG-CUCCG--GCaCUGGUG- -5'
28731 5' -63 NC_006146.1 + 13308 0.66 0.650376
Target:  5'- cCCCCaCGUGCUGggcaccaGGGCgGUGgagucgGCCGCg -3'
miRNA:   3'- aGGGGcGCACGGC-------UCCGgCAC------UGGUG- -5'
28731 5' -63 NC_006146.1 + 18851 0.66 0.641673
Target:  5'- aCCCCggGCGcUGCCGGGGUgGUGgACgUGCg -3'
miRNA:   3'- aGGGG--CGC-ACGGCUCCGgCAC-UG-GUG- -5'
28731 5' -63 NC_006146.1 + 56158 0.66 0.641673
Target:  5'- cUCCCCGCG-GCCGuccuugaggauGcGCCGauacucGGCCGCc -3'
miRNA:   3'- -AGGGGCGCaCGGCu----------C-CGGCa-----CUGGUG- -5'
28731 5' -63 NC_006146.1 + 116653 0.66 0.641673
Target:  5'- uUUCCCGCcUGaCCGGGGCCGc--CCAg -3'
miRNA:   3'- -AGGGGCGcAC-GGCUCCGGCacuGGUg -5'
28731 5' -63 NC_006146.1 + 33204 0.66 0.631996
Target:  5'- cCUCCGgGUGCuccuggugcucCGGGGCagccggGUGGCCGCc -3'
miRNA:   3'- aGGGGCgCACG-----------GCUCCGg-----CACUGGUG- -5'
28731 5' -63 NC_006146.1 + 150784 0.66 0.631996
Target:  5'- cCCCCaGCagGUGCCGGGccaCCGUGuCCAg -3'
miRNA:   3'- aGGGG-CG--CACGGCUCc--GGCACuGGUg -5'
28731 5' -63 NC_006146.1 + 68724 0.66 0.631996
Target:  5'- gUCCCCgagagcugucGCGgggugGUgGAGGCCcagGUGGCCAa -3'
miRNA:   3'- -AGGGG----------CGCa----CGgCUCCGG---CACUGGUg -5'
28731 5' -63 NC_006146.1 + 127411 0.66 0.622319
Target:  5'- gCCCCGCc-GCCGGaGCCGgugucaacGGCCGCc -3'
miRNA:   3'- aGGGGCGcaCGGCUcCGGCa-------CUGGUG- -5'
28731 5' -63 NC_006146.1 + 71777 0.66 0.622319
Target:  5'- cCCCUGUGgagacGCCuGAGGCCGgagGGCagGCg -3'
miRNA:   3'- aGGGGCGCa----CGG-CUCCGGCa--CUGg-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.