miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 170308 0.67 0.743684
Target:  5'- gGGCaggGCUGGCGCCGGGccg--CGCCc -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCuaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 170195 0.66 0.797931
Target:  5'- gGGCgggGCCGGgGCCuGGcgGGg-GCCa -3'
miRNA:   3'- gCCGa--CGGCCgUGGcUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 170159 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 170091 0.75 0.334337
Target:  5'- cCGGCgggagggGCCGGCGCCGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGGC-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 169377 0.67 0.743684
Target:  5'- gGGCaggGCUGGCGCCGGGccg--CGCCc -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCuaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 169264 0.66 0.797931
Target:  5'- gGGCgggGCCGGgGCCuGGcgGGg-GCCa -3'
miRNA:   3'- gCCGa--CGGCCgUGGcUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 169228 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 169159 0.68 0.676391
Target:  5'- cCGGCgggagggGCCGGCGCCuGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGG-C-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 168445 0.67 0.743684
Target:  5'- gGGCaggGCUGGCGCCGGGccg--CGCCc -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCuaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 168332 0.66 0.797931
Target:  5'- gGGCgggGCCGGgGCCuGGcgGGg-GCCa -3'
miRNA:   3'- gCCGa--CGGCCgUGGcUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 168296 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 168227 0.68 0.676391
Target:  5'- cCGGCgggagggGCCGGCGCCuGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGG-C-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 167513 0.67 0.743684
Target:  5'- gGGCaggGCUGGCGCCGGGccg--CGCCc -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCuaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 167400 0.66 0.797931
Target:  5'- gGGCgggGCCGGgGCCuGGcgGGg-GCCa -3'
miRNA:   3'- gCCGa--CGGCCgUGGcUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 167364 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 167295 0.68 0.676391
Target:  5'- cCGGCgggagggGCCGGCGCCuGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGG-C-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 166373 1.1 0.001452
Target:  5'- gCGGCUGCCGGCACCGAGAUGGUCACCc -3'
miRNA:   3'- -GCCGACGGCCGUGGCUCUACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 166019 0.67 0.770421
Target:  5'- gCGGUUGUgGGCAUCGGGGgugccugUGGccccCGCCc -3'
miRNA:   3'- -GCCGACGgCCGUGGCUCU-------ACCa---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 162232 0.68 0.715224
Target:  5'- gGGCUagGCUGGUguACC-AGGUGGUCAUUc -3'
miRNA:   3'- gCCGA--CGGCCG--UGGcUCUACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 161754 0.68 0.695907
Target:  5'- uGGCgGCUGaGguCCGAGggGG-CGCCu -3'
miRNA:   3'- gCCGaCGGC-CguGGCUCuaCCaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.