miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 154661 0.66 0.881902
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGu -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 120044 0.66 0.881902
Target:  5'- aCCCCGcGcGGAG-ACUgguggcgcugcUGCGCCgggaagACGGAGc -3'
miRNA:   3'- -GGGGU-C-CCUCaUGA-----------ACGCGG------UGCCUC- -5'
28737 3' -58 NC_006146.1 + 34090 0.66 0.881902
Target:  5'- gUCCCGGGGGGcagccGCgacccagcGCGCCccguucACGGGGg -3'
miRNA:   3'- -GGGGUCCCUCa----UGaa------CGCGG------UGCCUC- -5'
28737 3' -58 NC_006146.1 + 92457 0.66 0.881902
Target:  5'- gCCUGGGGucugaauuggcgGGUAUaUGUGCC-CGGGGg -3'
miRNA:   3'- gGGGUCCC------------UCAUGaACGCGGuGCCUC- -5'
28737 3' -58 NC_006146.1 + 136826 0.66 0.881902
Target:  5'- cCCCCcGGGAcccccgGCcccGUGCCACGGGa -3'
miRNA:   3'- -GGGGuCCCUca----UGaa-CGCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 70989 0.66 0.881902
Target:  5'- aCCC--GGAGcccgcuCUUGCGCC-CGGGGg -3'
miRNA:   3'- gGGGucCCUCau----GAACGCGGuGCCUC- -5'
28737 3' -58 NC_006146.1 + 48952 0.66 0.879844
Target:  5'- gCCUCAGGGAGUugugggagcgauugGCgaugagcacgUUGCuGaCCugGGAGg -3'
miRNA:   3'- -GGGGUCCCUCA--------------UG----------AACG-C-GGugCCUC- -5'
28737 3' -58 NC_006146.1 + 114716 0.66 0.877766
Target:  5'- aCCCGGGcccuggcggccGAGUAUcgGCgcauccucaaggacgGCCGCGGGGa -3'
miRNA:   3'- gGGGUCC-----------CUCAUGaaCG---------------CGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 53329 0.66 0.874967
Target:  5'- gCCCGaGGAGgcCcgGCgGCCGCGGGGc -3'
miRNA:   3'- gGGGUcCCUCauGaaCG-CGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 119264 0.66 0.874967
Target:  5'- cCCCCuGGGAGUccagaGCcUGgaGCaCACGGAc -3'
miRNA:   3'- -GGGGuCCCUCA-----UGaACg-CG-GUGCCUc -5'
28737 3' -58 NC_006146.1 + 144048 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 124520 0.66 0.874967
Target:  5'- gCCCuGGcGAGggACggGgGCCugGGGGa -3'
miRNA:   3'- gGGGuCC-CUCa-UGaaCgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 147126 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 150204 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 153282 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 156360 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 115860 0.66 0.867826
Target:  5'- aCCCCGGGGugaaucuuGaGCUUG-GCCugGGcGa -3'
miRNA:   3'- -GGGGUCCCu-------CaUGAACgCGGugCCuC- -5'
28737 3' -58 NC_006146.1 + 95403 0.66 0.867826
Target:  5'- aCUUCAGGGGGUugUacaGCCAcCGGAu -3'
miRNA:   3'- -GGGGUCCCUCAugAacgCGGU-GCCUc -5'
28737 3' -58 NC_006146.1 + 113645 0.66 0.860485
Target:  5'- gCUCCGGGGGauGgcCUUGCuGaCCACGGGc -3'
miRNA:   3'- -GGGGUCCCU--CauGAACG-C-GGUGCCUc -5'
28737 3' -58 NC_006146.1 + 169407 0.66 0.860485
Target:  5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3'
miRNA:   3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.