Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28737 | 3' | -58 | NC_006146.1 | + | 154661 | 0.66 | 0.881902 |
Target: 5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGu -3' miRNA: 3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 120044 | 0.66 | 0.881902 |
Target: 5'- aCCCCGcGcGGAG-ACUgguggcgcugcUGCGCCgggaagACGGAGc -3' miRNA: 3'- -GGGGU-C-CCUCaUGA-----------ACGCGG------UGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 34090 | 0.66 | 0.881902 |
Target: 5'- gUCCCGGGGGGcagccGCgacccagcGCGCCccguucACGGGGg -3' miRNA: 3'- -GGGGUCCCUCa----UGaa------CGCGG------UGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 92457 | 0.66 | 0.881902 |
Target: 5'- gCCUGGGGucugaauuggcgGGUAUaUGUGCC-CGGGGg -3' miRNA: 3'- gGGGUCCC------------UCAUGaACGCGGuGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 136826 | 0.66 | 0.881902 |
Target: 5'- cCCCCcGGGAcccccgGCcccGUGCCACGGGa -3' miRNA: 3'- -GGGGuCCCUca----UGaa-CGCGGUGCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 70989 | 0.66 | 0.881902 |
Target: 5'- aCCC--GGAGcccgcuCUUGCGCC-CGGGGg -3' miRNA: 3'- gGGGucCCUCau----GAACGCGGuGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 48952 | 0.66 | 0.879844 |
Target: 5'- gCCUCAGGGAGUugugggagcgauugGCgaugagcacgUUGCuGaCCugGGAGg -3' miRNA: 3'- -GGGGUCCCUCA--------------UG----------AACG-C-GGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 114716 | 0.66 | 0.877766 |
Target: 5'- aCCCGGGcccuggcggccGAGUAUcgGCgcauccucaaggacgGCCGCGGGGa -3' miRNA: 3'- gGGGUCC-----------CUCAUGaaCG---------------CGGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 53329 | 0.66 | 0.874967 |
Target: 5'- gCCCGaGGAGgcCcgGCgGCCGCGGGGc -3' miRNA: 3'- gGGGUcCCUCauGaaCG-CGGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 119264 | 0.66 | 0.874967 |
Target: 5'- cCCCCuGGGAGUccagaGCcUGgaGCaCACGGAc -3' miRNA: 3'- -GGGGuCCCUCA-----UGaACg-CG-GUGCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 144048 | 0.66 | 0.874967 |
Target: 5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3' miRNA: 3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 124520 | 0.66 | 0.874967 |
Target: 5'- gCCCuGGcGAGggACggGgGCCugGGGGa -3' miRNA: 3'- gGGGuCC-CUCa-UGaaCgCGGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 147126 | 0.66 | 0.874967 |
Target: 5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3' miRNA: 3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 150204 | 0.66 | 0.874967 |
Target: 5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3' miRNA: 3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 153282 | 0.66 | 0.874967 |
Target: 5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3' miRNA: 3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 156360 | 0.66 | 0.874967 |
Target: 5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3' miRNA: 3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 115860 | 0.66 | 0.867826 |
Target: 5'- aCCCCGGGGugaaucuuGaGCUUG-GCCugGGcGa -3' miRNA: 3'- -GGGGUCCCu-------CaUGAACgCGGugCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 95403 | 0.66 | 0.867826 |
Target: 5'- aCUUCAGGGGGUugUacaGCCAcCGGAu -3' miRNA: 3'- -GGGGUCCCUCAugAacgCGGU-GCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 113645 | 0.66 | 0.860485 |
Target: 5'- gCUCCGGGGGauGgcCUUGCuGaCCACGGGc -3' miRNA: 3'- -GGGGUCCCU--CauGAACG-C-GGUGCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 169407 | 0.66 | 0.860485 |
Target: 5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3' miRNA: 3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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