miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 9929 0.66 0.947963
Target:  5'- aGCCCgcgAGCAGgaGCAGcuGAGCGAaaagCCUg -3'
miRNA:   3'- -CGGGa--UUGUCg-UGUCu-CUCGCUg---GGG- -5'
28737 5' -55.4 NC_006146.1 + 68062 0.66 0.947963
Target:  5'- aGCUCcacgAGCGGCGC-GAGcaAGCGcagaGCCCCc -3'
miRNA:   3'- -CGGGa---UUGUCGUGuCUC--UCGC----UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 3167 0.66 0.947963
Target:  5'- cGCCCUGAUcgAGCACcu---GCGAUCUCu -3'
miRNA:   3'- -CGGGAUUG--UCGUGucucuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 84856 0.66 0.947963
Target:  5'- aGCUggAGgAGCcgACGGAGAcaGCGGCUCCa -3'
miRNA:   3'- -CGGgaUUgUCG--UGUCUCU--CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 115389 0.66 0.947536
Target:  5'- gGCCCUGGCcGCucgcgugcaggagGCAGcuGGCGGCCg- -3'
miRNA:   3'- -CGGGAUUGuCG-------------UGUCucUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 151667 0.66 0.947536
Target:  5'- uGCCCUGAgGGCGuuGAGgacGGCaaacucacguccaGGCCCUg -3'
miRNA:   3'- -CGGGAUUgUCGUguCUC---UCG-------------CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 123802 0.66 0.945368
Target:  5'- gGCCUUcuacgaGACGGCGCAGcccaccgucuucgucAG-GCGcCCCCu -3'
miRNA:   3'- -CGGGA------UUGUCGUGUC---------------UCuCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 119337 0.66 0.943591
Target:  5'- cCCCUcccGGCGGCGCccAGGGucaucacguacGGCGgcuGCCCCg -3'
miRNA:   3'- cGGGA---UUGUCGUG--UCUC-----------UCGC---UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 29133 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 13744 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 65062 0.66 0.943591
Target:  5'- aGCuCUUGGCAGCGCcuccggaugucGGccGGgGACCCCu -3'
miRNA:   3'- -CG-GGAUUGUCGUG-----------UCucUCgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 26055 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 19900 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22977 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 80414 0.66 0.943591
Target:  5'- cGCCacauCUGGCuuCACAGAcugcaGAGUGACgCCCa -3'
miRNA:   3'- -CGG----GAUUGucGUGUCU-----CUCGCUG-GGG- -5'
28737 5' -55.4 NC_006146.1 + 156257 0.66 0.943591
Target:  5'- uGCCgUGguuggGCAGCACcauGAGCucCCCCa -3'
miRNA:   3'- -CGGgAU-----UGUCGUGucuCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 16822 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 111396 0.66 0.943591
Target:  5'- uCCCUcACGauGCGCucAGAGAgGCGGgCCCa -3'
miRNA:   3'- cGGGAuUGU--CGUG--UCUCU-CGCUgGGG- -5'
28737 5' -55.4 NC_006146.1 + 117902 0.66 0.943591
Target:  5'- gGCCC--AgGGC-CAGaAGAGgGGCCUCg -3'
miRNA:   3'- -CGGGauUgUCGuGUC-UCUCgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 51785 0.66 0.943141
Target:  5'- uGCCCaGAgccgagucCAGcCACuugaucaGGAGGGCGGCCUCc -3'
miRNA:   3'- -CGGGaUU--------GUC-GUG-------UCUCUCGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.