miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 154457 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 148301 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 142145 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 15444 0.73 0.613445
Target:  5'- aGUCCUGccuGGCGCAGcAGAGCGAgaCCCUg -3'
miRNA:   3'- -CGGGAUug-UCGUGUC-UCUCGCU--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 151379 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22898 0.73 0.633797
Target:  5'- gGCCCcAACAuGUGCAGGGAa-GGCCCCa -3'
miRNA:   3'- -CGGGaUUGU-CGUGUCUCUcgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 77991 0.73 0.633797
Target:  5'- gGUCCUcucugucugGACAGCACGGGGGGUgguGGCCUa -3'
miRNA:   3'- -CGGGA---------UUGUCGUGUCUCUCG---CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 110393 0.73 0.603286
Target:  5'- gGCCCagUGGgAGCACccucgccgucgGGGGAGCuGGCCCCc -3'
miRNA:   3'- -CGGG--AUUgUCGUG-----------UCUCUCG-CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 128226 0.73 0.613445
Target:  5'- cGCUCUuuCGGCGCGGGGAGCucUUCCg -3'
miRNA:   3'- -CGGGAuuGUCGUGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 146671 0.73 0.613445
Target:  5'- aCCCUccCGG-GCGGuGGGCGGCCCCg -3'
miRNA:   3'- cGGGAuuGUCgUGUCuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 147167 0.73 0.623618
Target:  5'- aCCCggcGGCGGCGCAGAccGGCG-CCCCu -3'
miRNA:   3'- cGGGa--UUGUCGUGUCUc-UCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 145576 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 165487 0.72 0.684512
Target:  5'- aGCCCUGAaucCAGCAgGGcaGGAcGCaGCCCCg -3'
miRNA:   3'- -CGGGAUU---GUCGUgUC--UCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157887 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 142498 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 107975 0.72 0.668349
Target:  5'- gGCCCUggagaccacaGACAGggcaaagacggugcaCGCAGAGAGaaGCCCCa -3'
miRNA:   3'- -CGGGA----------UUGUC---------------GUGUCUCUCgcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 121663 0.72 0.698566
Target:  5'- gGCCCUGGacccggaGGUGCAgGAGGGCaucgaccguauccugGACCCCa -3'
miRNA:   3'- -CGGGAUUg------UCGUGU-CUCUCG---------------CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 40140 0.72 0.674421
Target:  5'- uGUCCUuGCGGUACAGGGcGGCGucuuCUCCg -3'
miRNA:   3'- -CGGGAuUGUCGUGUCUC-UCGCu---GGGG- -5'
28737 5' -55.4 NC_006146.1 + 148654 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 151731 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.