miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 92332 0.7 0.695657
Target:  5'- gGCCCGGCCuggGGCAGcugaUAUGgggcgGCUcgCa -3'
miRNA:   3'- aCGGGCCGG---CCGUC----AUACa----CGAuaGg -5'
28738 5' -57 NC_006146.1 + 121355 0.67 0.826155
Target:  5'- gGCCUGGCCGGC---GUG-GCc-UCCg -3'
miRNA:   3'- aCGGGCCGGCCGucaUACaCGauAGG- -5'
28738 5' -57 NC_006146.1 + 59899 0.67 0.825316
Target:  5'- gGCCCcguccagaaagaGGuuGGUGGUcgcucggAUGuUGCUAUCCa -3'
miRNA:   3'- aCGGG------------CCggCCGUCA-------UAC-ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 132624 0.67 0.817688
Target:  5'- ----gGGCCGGCAGUGUG-GCccgcUCCa -3'
miRNA:   3'- acgggCCGGCCGUCAUACaCGau--AGG- -5'
28738 5' -57 NC_006146.1 + 89120 0.67 0.817688
Target:  5'- aGCCCGGUgGGauuGGUAUuGUGCc-UCCc -3'
miRNA:   3'- aCGGGCCGgCCg--UCAUA-CACGauAGG- -5'
28738 5' -57 NC_006146.1 + 127596 0.68 0.782251
Target:  5'- cGCgCCGGCCGGguGagaGUGaCUAaCCu -3'
miRNA:   3'- aCG-GGCCGGCCguCauaCAC-GAUaGG- -5'
28738 5' -57 NC_006146.1 + 12020 0.68 0.782251
Target:  5'- gUGCCCGaGaCCGGCAgcuacGUGgcggGUGCgg-CCa -3'
miRNA:   3'- -ACGGGC-C-GGCCGU-----CAUa---CACGauaGG- -5'
28738 5' -57 NC_006146.1 + 103687 0.69 0.758049
Target:  5'- gUGCCUGGCCGGCcaggcgaccggccacGGccaGUGgaAUCCc -3'
miRNA:   3'- -ACGGGCCGGCCG---------------UCauaCACgaUAGG- -5'
28738 5' -57 NC_006146.1 + 50886 0.69 0.725311
Target:  5'- gUGCCCGGaCUGGCGcGg--GUGCgg-CCu -3'
miRNA:   3'- -ACGGGCC-GGCCGU-CauaCACGauaGG- -5'
28738 5' -57 NC_006146.1 + 132094 0.67 0.84256
Target:  5'- gGCCUGGCU-GCAG-AUGUGCaccCCg -3'
miRNA:   3'- aCGGGCCGGcCGUCaUACACGauaGG- -5'
28738 5' -57 NC_006146.1 + 39836 0.67 0.849702
Target:  5'- gGCCUcggccgcacagugGGCCGGCGGgggcUGUGUGC---CCg -3'
miRNA:   3'- aCGGG-------------CCGGCCGUC----AUACACGauaGG- -5'
28738 5' -57 NC_006146.1 + 103842 0.66 0.873071
Target:  5'- gGCCCGuCUGGCAGag-GUGgUcUCCg -3'
miRNA:   3'- aCGGGCcGGCCGUCauaCACgAuAGG- -5'
28738 5' -57 NC_006146.1 + 64026 0.66 0.88708
Target:  5'- aGgCgGGCCGGCuuGUGcuUGUaCUGUCCc -3'
miRNA:   3'- aCgGgCCGGCCGu-CAU--ACAcGAUAGG- -5'
28738 5' -57 NC_006146.1 + 157358 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 154280 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 151202 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 148124 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 145046 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 141968 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 77963 0.66 0.880184
Target:  5'- gGCCgGaGCCGGUGGccuuggagGUGCcgGUCCu -3'
miRNA:   3'- aCGGgC-CGGCCGUCaua-----CACGa-UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.