Results 1 - 20 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28758 | 3' | -56.1 | NC_006146.1 | + | 122663 | 0.65 | 0.920692 |
Target: 5'- -cGGgGGCCCUccgcGCGGCGcucacccaggcgcGCCaGGCCc -3' miRNA: 3'- gaCCgCCGGGA----UGUCGUu------------UGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 160135 | 0.65 | 0.920692 |
Target: 5'- -aGGUGGCCaggggguagaAGUAGAUgUAGCCg -3' miRNA: 3'- gaCCGCCGGgaug------UCGUUUGgAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 112702 | 0.66 | 0.917295 |
Target: 5'- -gGGUcuGGCCC-GCAGCAGGgcgucCCUgaGGCCc -3' miRNA: 3'- gaCCG--CCGGGaUGUCGUUU-----GGA--UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 44725 | 0.66 | 0.917295 |
Target: 5'- gCUGGcCGGCCUgaUGCGGU-GGCCgcgGGCg -3' miRNA: 3'- -GACC-GCCGGG--AUGUCGuUUGGa--UCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 24918 | 0.66 | 0.917295 |
Target: 5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCc -3' miRNA: 3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 161639 | 0.66 | 0.917295 |
Target: 5'- gCUGGUGGCCU--UAGUuuGCUgugGGCUg -3' miRNA: 3'- -GACCGCCGGGauGUCGuuUGGa--UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 55065 | 0.66 | 0.917295 |
Target: 5'- -aGGCGGCCgUaucggacccACAGCAggGACCUGa-- -3' miRNA: 3'- gaCCGCCGGgA---------UGUCGU--UUGGAUcgg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 101942 | 0.66 | 0.917295 |
Target: 5'- --aGCGGCUCUGCccuGCcc-CCUGGCUa -3' miRNA: 3'- gacCGCCGGGAUGu--CGuuuGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 54723 | 0.66 | 0.917295 |
Target: 5'- gCUGGUGGgauuugccuuCUCUG-AGCGGACCagGGCCg -3' miRNA: 3'- -GACCGCC----------GGGAUgUCGUUUGGa-UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 16654 | 0.66 | 0.917295 |
Target: 5'- cCUGa-GGCCCacCAGCG-GCCUGGCUa -3' miRNA: 3'- -GACcgCCGGGauGUCGUuUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 19604 | 0.66 | 0.917295 |
Target: 5'- cCUGGCccUCCUACA-CGGcCCUGGCCu -3' miRNA: 3'- -GACCGccGGGAUGUcGUUuGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 46820 | 0.66 | 0.91672 |
Target: 5'- uCUGGCuuacguGGCCCUguccaucaACGGCAAcaaguuucaguacACUggGGCCa -3' miRNA: 3'- -GACCG------CCGGGA--------UGUCGUU-------------UGGa-UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 82117 | 0.66 | 0.91672 |
Target: 5'- -aGGCuccacGCCCUGUAGCAcauggggagucucAGCCUcAGCCa -3' miRNA: 3'- gaCCGc----CGGGAUGUCGU-------------UUGGA-UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 153763 | 0.66 | 0.911443 |
Target: 5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3' miRNA: 3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 147608 | 0.66 | 0.911443 |
Target: 5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3' miRNA: 3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 141452 | 0.66 | 0.911443 |
Target: 5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3' miRNA: 3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 120768 | 0.66 | 0.911443 |
Target: 5'- gCUGGCGGCgCCU-CAuGUc--CCUGGCg -3' miRNA: 3'- -GACCGCCG-GGAuGU-CGuuuGGAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 115499 | 0.66 | 0.911443 |
Target: 5'- -cGGCGGgCgaCUACGccGUGAugCUGGCCu -3' miRNA: 3'- gaCCGCCgG--GAUGU--CGUUugGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 162594 | 0.66 | 0.911443 |
Target: 5'- -cGGgGGCCCUaACAGCAcagagagcGACCccgggAGUg -3' miRNA: 3'- gaCCgCCGGGA-UGUCGU--------UUGGa----UCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 135164 | 0.66 | 0.911443 |
Target: 5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3' miRNA: 3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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