miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 122663 0.65 0.920692
Target:  5'- -cGGgGGCCCUccgcGCGGCGcucacccaggcgcGCCaGGCCc -3'
miRNA:   3'- gaCCgCCGGGA----UGUCGUu------------UGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 160135 0.65 0.920692
Target:  5'- -aGGUGGCCaggggguagaAGUAGAUgUAGCCg -3'
miRNA:   3'- gaCCGCCGGgaug------UCGUUUGgAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 101942 0.66 0.917295
Target:  5'- --aGCGGCUCUGCccuGCcc-CCUGGCUa -3'
miRNA:   3'- gacCGCCGGGAUGu--CGuuuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 44725 0.66 0.917295
Target:  5'- gCUGGcCGGCCUgaUGCGGU-GGCCgcgGGCg -3'
miRNA:   3'- -GACC-GCCGGG--AUGUCGuUUGGa--UCGg -5'
28758 3' -56.1 NC_006146.1 + 55065 0.66 0.917295
Target:  5'- -aGGCGGCCgUaucggacccACAGCAggGACCUGa-- -3'
miRNA:   3'- gaCCGCCGGgA---------UGUCGU--UUGGAUcgg -5'
28758 3' -56.1 NC_006146.1 + 24918 0.66 0.917295
Target:  5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCc -3'
miRNA:   3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 161639 0.66 0.917295
Target:  5'- gCUGGUGGCCU--UAGUuuGCUgugGGCUg -3'
miRNA:   3'- -GACCGCCGGGauGUCGuuUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 54723 0.66 0.917295
Target:  5'- gCUGGUGGgauuugccuuCUCUG-AGCGGACCagGGCCg -3'
miRNA:   3'- -GACCGCC----------GGGAUgUCGUUUGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 16654 0.66 0.917295
Target:  5'- cCUGa-GGCCCacCAGCG-GCCUGGCUa -3'
miRNA:   3'- -GACcgCCGGGauGUCGUuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 112702 0.66 0.917295
Target:  5'- -gGGUcuGGCCC-GCAGCAGGgcgucCCUgaGGCCc -3'
miRNA:   3'- gaCCG--CCGGGaUGUCGUUU-----GGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 19604 0.66 0.917295
Target:  5'- cCUGGCccUCCUACA-CGGcCCUGGCCu -3'
miRNA:   3'- -GACCGccGGGAUGUcGUUuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 46820 0.66 0.91672
Target:  5'- uCUGGCuuacguGGCCCUguccaucaACGGCAAcaaguuucaguacACUggGGCCa -3'
miRNA:   3'- -GACCG------CCGGGA--------UGUCGUU-------------UGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 82117 0.66 0.91672
Target:  5'- -aGGCuccacGCCCUGUAGCAcauggggagucucAGCCUcAGCCa -3'
miRNA:   3'- gaCCGc----CGGGAUGUCGU-------------UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 135164 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 111146 0.66 0.911443
Target:  5'- -aGGUGGCCggGCGGCuGGCCU--CCu -3'
miRNA:   3'- gaCCGCCGGgaUGUCGuUUGGAucGG- -5'
28758 3' -56.1 NC_006146.1 + 114816 0.66 0.911443
Target:  5'- gCUGGUGGCCg-ACA-CcuACUUGGCCc -3'
miRNA:   3'- -GACCGCCGGgaUGUcGuuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 162594 0.66 0.911443
Target:  5'- -cGGgGGCCCUaACAGCAcagagagcGACCccgggAGUg -3'
miRNA:   3'- gaCCgCCGGGA-UGUCGU--------UUGGa----UCGg -5'
28758 3' -56.1 NC_006146.1 + 115499 0.66 0.911443
Target:  5'- -cGGCGGgCgaCUACGccGUGAugCUGGCCu -3'
miRNA:   3'- gaCCGCCgG--GAUGU--CGUUugGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 120768 0.66 0.911443
Target:  5'- gCUGGCGGCgCCU-CAuGUc--CCUGGCg -3'
miRNA:   3'- -GACCGCCG-GGAuGU-CGuuuGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 144530 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.