miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 78811 0.66 0.99553
Target:  5'- cCCAGcAGCA--GCC-CCAGGccggGCCGCc -3'
miRNA:   3'- -GGUUaUCGUacUGGaGGUCCa---UGGUG- -5'
28760 3' -51 NC_006146.1 + 33964 0.66 0.99553
Target:  5'- uCCGGgugGGCGUGGuCCgCUGGGU-CCGCu -3'
miRNA:   3'- -GGUUa--UCGUACU-GGaGGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 109893 0.66 0.994791
Target:  5'- gCGAUcGGcCGUGGCCUCCAGaaACUGCc -3'
miRNA:   3'- gGUUA-UC-GUACUGGAGGUCcaUGGUG- -5'
28760 3' -51 NC_006146.1 + 135818 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 135911 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 135354 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 135540 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 33188 0.66 0.994791
Target:  5'- gCCGcucGGUccugGGCCUCCGGGUGCUc- -3'
miRNA:   3'- -GGUua-UCGua--CUGGAGGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 135447 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 147463 0.66 0.994791
Target:  5'- gCCGAgacgGGCAgccgGAgCUUguGGUACUGCc -3'
miRNA:   3'- -GGUUa---UCGUa---CUgGAGguCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 136190 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 135633 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 103727 0.66 0.994791
Target:  5'- cCCAAggAGCAguuCCUCCcGGacGCCGCg -3'
miRNA:   3'- -GGUUa-UCGUacuGGAGGuCCa-UGGUG- -5'
28760 3' -51 NC_006146.1 + 17200 0.66 0.994791
Target:  5'- aCCAu--GCAcGAgaaguacgaggcCCUCCAGG-ACCGCu -3'
miRNA:   3'- -GGUuauCGUaCU------------GGAGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 136283 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 136376 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 136469 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 136004 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 135168 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 136097 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.