miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 99560 0.66 0.987711
Target:  5'- cUGGCACcCCaGCAGGUGGaaaggCCAAUGu -3'
miRNA:   3'- -ACUGUGuGGaCGUCCAUUg----GGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 46577 0.66 0.987711
Target:  5'- gUGGCguGCGCCaGCAGcGUcauGGCCaCGAUGGg -3'
miRNA:   3'- -ACUG--UGUGGaCGUC-CA---UUGG-GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 136899 0.66 0.987248
Target:  5'- cGACccccCcCCUGCcuuccAGGUgcaccggaccagcgGACCCAGCGGa -3'
miRNA:   3'- aCUGu---GuGGACG-----UCCA--------------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 167246 0.66 0.986115
Target:  5'- gUGACagaACGCUggugagGCAGG-AGCUCAGCGa -3'
miRNA:   3'- -ACUG---UGUGGa-----CGUCCaUUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 119942 0.66 0.986115
Target:  5'- cGGCGCugCUGCcggAGGU--CUCggUGGg -3'
miRNA:   3'- aCUGUGugGACG---UCCAuuGGGuuGCC- -5'
28760 5' -52.7 NC_006146.1 + 128827 0.66 0.986115
Target:  5'- cGGCGCGguCCaggaGCAGGUAaGCCCGGCc- -3'
miRNA:   3'- aCUGUGU--GGa---CGUCCAU-UGGGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 139655 0.66 0.986115
Target:  5'- gGAgGagGCCUGCAuGG-AGCCCA-CGGa -3'
miRNA:   3'- aCUgUg-UGGACGU-CCaUUGGGUuGCC- -5'
28760 5' -52.7 NC_006146.1 + 136179 0.66 0.985947
Target:  5'- gUGGCGCACCUcgagguaggauagGgGGGUAcCCCAguaGGa -3'
miRNA:   3'- -ACUGUGUGGA-------------CgUCCAUuGGGUug-CC- -5'
28760 5' -52.7 NC_006146.1 + 118759 0.66 0.984906
Target:  5'- cGGCGCggcuucgACCUGguGG-GGCCCGagcugguguccagcgACGGg -3'
miRNA:   3'- aCUGUG-------UGGACguCCaUUGGGU---------------UGCC- -5'
28760 5' -52.7 NC_006146.1 + 877 0.66 0.984364
Target:  5'- gGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 1809 0.66 0.984364
Target:  5'- gGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 2741 0.66 0.984364
Target:  5'- gGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 3673 0.66 0.984364
Target:  5'- gGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 141473 0.66 0.984364
Target:  5'- gGGcCugGCCUGCGGGgGACagggugGACGGg -3'
miRNA:   3'- aCU-GugUGGACGUCCaUUGgg----UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 144551 0.66 0.984364
Target:  5'- gGGcCugGCCUGCGGGgGACagggugGACGGg -3'
miRNA:   3'- aCU-GugUGGACGUCCaUUGgg----UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 147629 0.66 0.984364
Target:  5'- gGGcCugGCCUGCGGGgGACagggugGACGGg -3'
miRNA:   3'- aCU-GugUGGACGUCCaUUGgg----UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 150706 0.66 0.984364
Target:  5'- gGGcCugGCCUGCGGGgGACagggugGACGGg -3'
miRNA:   3'- aCU-GugUGGACGUCCaUUGgg----UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 153784 0.66 0.984364
Target:  5'- gGGcCugGCCUGCGGGgGACagggugGACGGg -3'
miRNA:   3'- aCU-GugUGGACGUCCaUUGgg----UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 156862 0.66 0.984364
Target:  5'- gGGcCugGCCUGCGGGgGACagggugGACGGg -3'
miRNA:   3'- aCU-GugUGGACGUCCaUUGgg----UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 147469 0.66 0.982451
Target:  5'- gGGCugGCCUGCcagggggcaaAGGggGCUCAGaGGg -3'
miRNA:   3'- aCUGugUGGACG----------UCCauUGGGUUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.