miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 63002 0.66 0.994359
Target:  5'- gGGCUCCGGGaGuCUGG-CGGGUg- -3'
miRNA:   3'- -UUGGGGCCC-C-GACUaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 95517 0.66 0.994359
Target:  5'- --aUCCGGGaGCUG-UCGGGUg- -3'
miRNA:   3'- uugGGGCCC-CGACuAGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 8429 0.66 0.994359
Target:  5'- gGACCCUGGGGaccagGAgagcUCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCga---CU----AGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 162038 0.66 0.994359
Target:  5'- gAGCCUgGGGGCggGggCAGGc-- -3'
miRNA:   3'- -UUGGGgCCCCGa-CuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 138779 0.66 0.994271
Target:  5'- cACCCCGGGGUgacguggcaccccUGcgugcuuuUCAGGUg- -3'
miRNA:   3'- uUGGGGCCCCG-------------ACu-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 44820 0.66 0.994091
Target:  5'- aGGCCCCGcugcGGCUGGUgacggaggugggugUAGGUUAu -3'
miRNA:   3'- -UUGGGGCc---CCGACUA--------------GUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 16720 0.66 0.993425
Target:  5'- cGCCCCGGGGUgGAUacuguGGa-- -3'
miRNA:   3'- uUGGGGCCCCGaCUAgu---CCaau -5'
28761 5' -49.6 NC_006146.1 + 4374 0.66 0.993425
Target:  5'- cGGCCCCGcGGGCUcccCAGGc-- -3'
miRNA:   3'- -UUGGGGC-CCCGAcuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 33343 0.66 0.993425
Target:  5'- uGCUCCGGGGCagc-CGGGUg- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 33221 0.66 0.993425
Target:  5'- uGCUCCGGGGCagc-CGGGUg- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 29593 0.66 0.992372
Target:  5'- gGACCCCgGGGGCUcagcCAGGc-- -3'
miRNA:   3'- -UUGGGG-CCCCGAcua-GUCCaau -5'
28761 5' -49.6 NC_006146.1 + 119090 0.66 0.991188
Target:  5'- cGCCCCGGGGaa---CGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgacuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 137215 0.66 0.991188
Target:  5'- cACCCCGGGGagGAagcCGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUa--GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 60960 0.66 0.991188
Target:  5'- aGGCCCgGGGGUggggGGUCAccuuGGUg- -3'
miRNA:   3'- -UUGGGgCCCCGa---CUAGU----CCAau -5'
28761 5' -49.6 NC_006146.1 + 149939 0.66 0.989864
Target:  5'- uGCCCuCGGGGUUGA--GGGg-- -3'
miRNA:   3'- uUGGG-GCCCCGACUagUCCaau -5'
28761 5' -49.6 NC_006146.1 + 41066 0.66 0.989864
Target:  5'- gGGCCUCGGGGUggaggGAggcCAGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGa----CUa--GUCCaau -5'
28761 5' -49.6 NC_006146.1 + 96158 0.66 0.989864
Target:  5'- -cCCCCGGaGGCUGGcUCAcugGGUc- -3'
miRNA:   3'- uuGGGGCC-CCGACU-AGU---CCAau -5'
28761 5' -49.6 NC_006146.1 + 58356 0.67 0.98839
Target:  5'- cGACCCCGGGuCUGAgcuccgaguUCgAGGUg- -3'
miRNA:   3'- -UUGGGGCCCcGACU---------AG-UCCAau -5'
28761 5' -49.6 NC_006146.1 + 1167 0.67 0.98839
Target:  5'- cGCCCCGGGGCUcccccgcgccGAUCuGa--- -3'
miRNA:   3'- uUGGGGCCCCGA----------CUAGuCcaau -5'
28761 5' -49.6 NC_006146.1 + 2099 0.67 0.98839
Target:  5'- cGCCCCGGGGCUcccccgcgccGAUCuGa--- -3'
miRNA:   3'- uUGGGGCCCCGA----------CUAGuCcaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.