miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 5' -50.3 NC_006146.1 + 111081 0.66 0.997311
Target:  5'- aCAAAGGGUGC-CCGgUCCCGcgaCAUCu -3'
miRNA:   3'- -GUUUUCUAUGcGGCgGGGGUua-GUAG- -5'
28763 5' -50.3 NC_006146.1 + 123811 0.66 0.997311
Target:  5'- --cGAGAcgGCGCaGCCCaCCGucuUCGUCa -3'
miRNA:   3'- guuUUCUa-UGCGgCGGG-GGUu--AGUAG- -5'
28763 5' -50.3 NC_006146.1 + 107144 0.66 0.996817
Target:  5'- gCAGAuAGGcUACGUCGCCCaCCAGaaacaCGUCg -3'
miRNA:   3'- -GUUU-UCU-AUGCGGCGGG-GGUUa----GUAG- -5'
28763 5' -50.3 NC_006146.1 + 22595 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 19517 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 98440 0.66 0.996249
Target:  5'- cCAGAAccGGUuucgGCGCCGCCCgggggCCAGUC-UCu -3'
miRNA:   3'- -GUUUU--CUA----UGCGGCGGG-----GGUUAGuAG- -5'
28763 5' -50.3 NC_006146.1 + 13361 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 16439 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 25673 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 131375 0.66 0.996249
Target:  5'- ------uUGCGCCGCcucCCCCAGccCAUCa -3'
miRNA:   3'- guuuucuAUGCGGCG---GGGGUUa-GUAG- -5'
28763 5' -50.3 NC_006146.1 + 28751 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 103758 0.66 0.996249
Target:  5'- uCAGGAGcgGCcaGCgGCUCCCGGUCuUCc -3'
miRNA:   3'- -GUUUUCuaUG--CGgCGGGGGUUAGuAG- -5'
28763 5' -50.3 NC_006146.1 + 121410 0.66 0.99587
Target:  5'- cCGGGAGAgucUGCCcaugaccaacaucagGgCCCCGAUCAUCu -3'
miRNA:   3'- -GUUUUCUau-GCGG---------------CgGGGGUUAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 121410 0.66 0.995601
Target:  5'- ---cAGAUgccACGCCGCCCCUGGcCGa- -3'
miRNA:   3'- guuuUCUA---UGCGGCGGGGGUUaGUag -5'
28763 5' -50.3 NC_006146.1 + 125990 0.66 0.995532
Target:  5'- uCAAGAGAUugucccaGCGCCGgCCgCUCAAgguacCAUCg -3'
miRNA:   3'- -GUUUUCUA-------UGCGGC-GG-GGGUUa----GUAG- -5'
28763 5' -50.3 NC_006146.1 + 117203 0.66 0.994864
Target:  5'- aGAGAGGUGgcagucucaaacUGCUGCCCCCGggCuUCc -3'
miRNA:   3'- gUUUUCUAU------------GCGGCGGGGGUuaGuAG- -5'
28763 5' -50.3 NC_006146.1 + 97676 0.66 0.994031
Target:  5'- gGAAAuGUGCGCCcuGCUCUCGAUgAUCg -3'
miRNA:   3'- gUUUUcUAUGCGG--CGGGGGUUAgUAG- -5'
28763 5' -50.3 NC_006146.1 + 122302 0.66 0.994031
Target:  5'- aCGucAGAUuuGCCaCCCCCA-UCGUCu -3'
miRNA:   3'- -GUuuUCUAugCGGcGGGGGUuAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 138474 0.66 0.994031
Target:  5'- -uGGAGGUauccuaACGCCGCCCCUAuauUCc-- -3'
miRNA:   3'- guUUUCUA------UGCGGCGGGGGUu--AGuag -5'
28763 5' -50.3 NC_006146.1 + 101253 0.67 0.992992
Target:  5'- uGGAGGAggACcgcgggcccauuaGCCGCCCCCAGUa--- -3'
miRNA:   3'- gUUUUCUa-UG-------------CGGCGGGGGUUAguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.