miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 2461 0.66 0.816003
Target:  5'- cGGCCCgGCgCCAGcccUGcccccucucccccgCCAGGCACa -3'
miRNA:   3'- aCCGGG-CGaGGUCu--ACaa------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 1529 0.66 0.816003
Target:  5'- cGGCCCgGCgCCAGcccUGcccccucucccccgCCAGGCACa -3'
miRNA:   3'- aCCGGG-CGaGGUCu--ACaa------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 598 0.66 0.816003
Target:  5'- cGGCCCgGCgCCAGcccUGcccccucucccccgCCAGGCACa -3'
miRNA:   3'- aCCGGG-CGaGGUCu--ACaa------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 3393 0.66 0.816003
Target:  5'- cGGCCCgGCgCCAGcccUGcccccucucccccgCCAGGCACa -3'
miRNA:   3'- aCCGGG-CGaGGUCu--ACaa------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 42714 0.66 0.815147
Target:  5'- aGcGCCCGCUCgGGcUGgcagccgcggaUCCGGGCGg -3'
miRNA:   3'- aC-CGGGCGAGgUCuACa----------AGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 57824 0.66 0.815147
Target:  5'- aGGCCgggUGCUCCAacc--UCCAGGCAg -3'
miRNA:   3'- aCCGG---GCGAGGUcuacaAGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 41065 0.66 0.812567
Target:  5'- gGGCUCGCUCggacgggggcguggCGGGUGggCCgcGGGCGa -3'
miRNA:   3'- aCCGGGCGAG--------------GUCUACaaGG--UCCGUg -5'
28764 5' -58.7 NC_006146.1 + 36112 0.66 0.806492
Target:  5'- gGGaCCCGCUgCUGGGUGgggguuguggCCuGGGCACu -3'
miRNA:   3'- aCC-GGGCGA-GGUCUACaa--------GG-UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 51588 0.66 0.806492
Target:  5'- gGGCCCGggggagCCAGAgGggCCAGcGUACc -3'
miRNA:   3'- aCCGGGCga----GGUCUaCaaGGUC-CGUG- -5'
28764 5' -58.7 NC_006146.1 + 154958 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 151880 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 148802 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 145724 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 142647 0.66 0.805618
Target:  5'- cGGCCUGC-CCAGccacccagccucgcCCAGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCuacaa---------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 136990 0.66 0.797684
Target:  5'- cGGaCCggaggaGCUCCAGGacggggGUaggCCGGGCACa -3'
miRNA:   3'- aCC-GGg-----CGAGGUCUa-----CAa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 21775 0.66 0.792328
Target:  5'- -cGCCCGCccaccauucuaagcCCAGcgGgaugCCGGGCGCg -3'
miRNA:   3'- acCGGGCGa-------------GGUCuaCaa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 120014 0.66 0.788729
Target:  5'- aGGCcgcacCCGCggCCAG----UCCGGGCACa -3'
miRNA:   3'- aCCG-----GGCGa-GGUCuacaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 40870 0.66 0.78329
Target:  5'- cGGCUCGCggUCCGGAgacggagccggggccUcGUcugcgaUCCGGGCGCg -3'
miRNA:   3'- aCCGGGCG--AGGUCU---------------A-CA------AGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33440 0.66 0.779637
Target:  5'- cGGUCCugggGCUCCGGGUGcaCCugaaAGGCAa -3'
miRNA:   3'- aCCGGG----CGAGGUCUACaaGG----UCCGUg -5'
28764 5' -58.7 NC_006146.1 + 133058 0.66 0.770416
Target:  5'- cUGGCgU-CUCCAGGgugGUUCCGGGUg- -3'
miRNA:   3'- -ACCGgGcGAGGUCUa--CAAGGUCCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.