Results 21 - 40 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 115428 | 0.69 | 0.564455 |
Target: 5'- gGCCUCguucUCGCCcgCGGCCaucgAGCgGGUGGc -3' miRNA: 3'- -CGGAGa---GGCGGa-GCCGG----UCGgUCAUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 115137 | 0.66 | 0.730825 |
Target: 5'- nGCCUCgCUGCCccUGGCCcgccGCCGGgcGg -3' miRNA: 3'- -CGGAGaGGCGGa-GCCGGu---CGGUCauC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 115099 | 0.68 | 0.63328 |
Target: 5'- gGCCUCUuccaCCGCCccgagucgcUGGCCAGCgUGGUGGc -3' miRNA: 3'- -CGGAGA----GGCGGa--------GCCGGUCG-GUCAUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 111576 | 0.73 | 0.353466 |
Target: 5'- uGCCgUCaacaCCGCCagccucUCGGCCAGCCAGg-- -3' miRNA: 3'- -CGG-AGa---GGCGG------AGCCGGUCGGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 110467 | 0.67 | 0.702027 |
Target: 5'- aGCUUCUCgGCCaUGGCCAGgaaGGUGa -3' miRNA: 3'- -CGGAGAGgCGGaGCCGGUCgg-UCAUc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 110436 | 0.66 | 0.730825 |
Target: 5'- gGCCUCUcaCCGCUccccgCGGCCuGCCGc--- -3' miRNA: 3'- -CGGAGA--GGCGGa----GCCGGuCGGUcauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 107857 | 0.67 | 0.692307 |
Target: 5'- uGCgUCUCCGCuCUaGGCCAGUgGuGUAa -3' miRNA: 3'- -CGgAGAGGCG-GAgCCGGUCGgU-CAUc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 106668 | 0.66 | 0.721294 |
Target: 5'- cCCUC-CCGCCcCGGCCcaGGCgCAGa-- -3' miRNA: 3'- cGGAGaGGCGGaGCCGG--UCG-GUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 106635 | 0.67 | 0.672735 |
Target: 5'- uGCCgCagCGCCUgcugCGGCCGGCUGGUcAGg -3' miRNA: 3'- -CGGaGagGCGGA----GCCGGUCGGUCA-UC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 105827 | 0.66 | 0.758905 |
Target: 5'- gGCCcCUCCuGCCcCGcGCC-GCCgAGUAGa -3' miRNA: 3'- -CGGaGAGG-CGGaGC-CGGuCGG-UCAUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 104104 | 0.69 | 0.583989 |
Target: 5'- cGCCUCaugcgCCGCCUgGGCCcgguGuCCAGg-- -3' miRNA: 3'- -CGGAGa----GGCGGAgCCGGu---C-GGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 103670 | 0.71 | 0.425327 |
Target: 5'- aGCCUCcguggcuUCCuguGCCU-GGCCGGCCAGgcGa -3' miRNA: 3'- -CGGAG-------AGG---CGGAgCCGGUCGGUCauC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 100736 | 0.66 | 0.721294 |
Target: 5'- gGCCUCgCCggccaccagcGCCcCGGCCaggAGCCAGgcGa -3' miRNA: 3'- -CGGAGaGG----------CGGaGCCGG---UCGGUCauC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 80271 | 0.67 | 0.692307 |
Target: 5'- cGCCUCccaaaccacccUCCcuuuuuaccacuGCCUCGGCCA-CCAG-AGg -3' miRNA: 3'- -CGGAG-----------AGG------------CGGAGCCGGUcGGUCaUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 78941 | 0.68 | 0.593809 |
Target: 5'- uGCCUCcCCaGgCUCcuaaaaggggcaGGCCuGCCAGUAGa -3' miRNA: 3'- -CGGAGaGG-CgGAG------------CCGGuCGGUCAUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 68091 | 0.66 | 0.738392 |
Target: 5'- aGCC-C-CCGCgCgauccaggugggCGGCCAGCCGGUc- -3' miRNA: 3'- -CGGaGaGGCG-Ga-----------GCCGGUCGGUCAuc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 67215 | 0.71 | 0.443512 |
Target: 5'- gGCCgg-UCGCCU-GGCCGGCCAGg-- -3' miRNA: 3'- -CGGagaGGCGGAgCCGGUCGGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 63146 | 0.66 | 0.711692 |
Target: 5'- gGCCaUCUCCGCCUCGaCCAuUCucGUGGu -3' miRNA: 3'- -CGG-AGAGGCGGAGCcGGUcGGu-CAUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 62836 | 0.67 | 0.692307 |
Target: 5'- cCCUggCCGCCgUGGCCAGgCCGG-AGg -3' miRNA: 3'- cGGAgaGGCGGaGCCGGUC-GGUCaUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 61718 | 0.67 | 0.692307 |
Target: 5'- aGCC-CUCUGUCUgGGCCucagacuaagGGCCGGg-- -3' miRNA: 3'- -CGGaGAGGCGGAgCCGG----------UCGGUCauc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home