miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 158413 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 85892 0.66 0.995755
Target:  5'- cGCUggaaCUAGgguGAGAGAGCCGcGGGGc -3'
miRNA:   3'- cCGAa---GAUUu--CUCUCUCGGCcUCUCc -5'
28769 5' -51.3 NC_006146.1 + 123052 0.66 0.995755
Target:  5'- gGGCgcugGAGGAGAGGGUCcucGAGAGc -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGGc--CUCUCc -5'
28769 5' -51.3 NC_006146.1 + 143022 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 146100 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 149178 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 152256 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 155334 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 141298 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 141906 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 144376 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 144984 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 147454 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 148062 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 150532 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 151140 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 153610 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 154218 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 156687 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 157296 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.