Results 1 - 20 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 155334 | 0.66 | 0.995755 |
Target: 5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3' miRNA: 3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 85892 | 0.66 | 0.995755 |
Target: 5'- cGCUggaaCUAGgguGAGAGAGCCGcGGGGc -3' miRNA: 3'- cCGAa---GAUUu--CUCUCUCGGCcUCUCc -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 123052 | 0.66 | 0.995755 |
Target: 5'- gGGCgcugGAGGAGAGGGUCcucGAGAGc -3' miRNA: 3'- -CCGaagaUUUCUCUCUCGGc--CUCUCc -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 143022 | 0.66 | 0.995755 |
Target: 5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3' miRNA: 3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 149178 | 0.66 | 0.995755 |
Target: 5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3' miRNA: 3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 158413 | 0.66 | 0.995755 |
Target: 5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3' miRNA: 3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 152256 | 0.66 | 0.995755 |
Target: 5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3' miRNA: 3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 146100 | 0.66 | 0.995755 |
Target: 5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3' miRNA: 3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 157296 | 0.66 | 0.995055 |
Target: 5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3' miRNA: 3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 156687 | 0.66 | 0.995055 |
Target: 5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3' miRNA: 3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 154218 | 0.66 | 0.995055 |
Target: 5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3' miRNA: 3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 153610 | 0.66 | 0.995055 |
Target: 5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3' miRNA: 3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 151140 | 0.66 | 0.995055 |
Target: 5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3' miRNA: 3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 150532 | 0.66 | 0.995055 |
Target: 5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3' miRNA: 3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 148062 | 0.66 | 0.995055 |
Target: 5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3' miRNA: 3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 147454 | 0.66 | 0.995055 |
Target: 5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3' miRNA: 3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 144984 | 0.66 | 0.995055 |
Target: 5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3' miRNA: 3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 144376 | 0.66 | 0.995055 |
Target: 5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3' miRNA: 3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 141906 | 0.66 | 0.995055 |
Target: 5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3' miRNA: 3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 141298 | 0.66 | 0.995055 |
Target: 5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3' miRNA: 3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home