miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28772 5' -63.8 NC_006146.1 + 9030 0.66 0.62865
Target:  5'- aGCCGGGucUCCCaGGGAGCCUauccacCGuGGAg -3'
miRNA:   3'- -CGGUCU--GGGG-CCCUCGGGga----GCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 61853 0.66 0.62865
Target:  5'- uGCCgGGACuCCCGGGgcagaGGUUCCaCGGGGGc -3'
miRNA:   3'- -CGG-UCUG-GGGCCC-----UCGGGGaGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 62293 0.66 0.62865
Target:  5'- cGCCuccgcGGACCCCuaccuGGGAGagCCCagCGAGGc -3'
miRNA:   3'- -CGG-----UCUGGGG-----CCCUCg-GGGa-GCUCCu -5'
28772 5' -63.8 NC_006146.1 + 153389 0.66 0.62865
Target:  5'- gGCCGGauuguugaggguGCCaaGGGAGUUCC-CGGGGGc -3'
miRNA:   3'- -CGGUC------------UGGggCCCUCGGGGaGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 33365 0.66 0.62865
Target:  5'- cGCCGGuggguCCgCCGGGccgcuGCCCCgcuccgggUGGGGGg -3'
miRNA:   3'- -CGGUCu----GG-GGCCCu----CGGGGa-------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 93607 0.66 0.619066
Target:  5'- cGCCGGGCUCCuGGGGCUgcuguCCUCcccgGAGGc -3'
miRNA:   3'- -CGGUCUGGGGcCCUCGG-----GGAG----CUCCu -5'
28772 5' -63.8 NC_006146.1 + 137601 0.66 0.619066
Target:  5'- gGCCGGGggCCGGGuGCCCCU--GGGu -3'
miRNA:   3'- -CGGUCUggGGCCCuCGGGGAgcUCCu -5'
28772 5' -63.8 NC_006146.1 + 41517 0.66 0.618108
Target:  5'- cGCCcggcuGACgCCCGGGAuccgcggGCUCCUCcuGAGGc -3'
miRNA:   3'- -CGGu----CUG-GGGCCCU-------CGGGGAG--CUCCu -5'
28772 5' -63.8 NC_006146.1 + 114717 0.66 0.616192
Target:  5'- cCCGGGCCCUGGcGGCCgaguaucggcgcauCCUCaAGGAc -3'
miRNA:   3'- cGGUCUGGGGCCcUCGG--------------GGAGcUCCU- -5'
28772 5' -63.8 NC_006146.1 + 70628 0.66 0.616192
Target:  5'- uGCCAGcCCCCGcuaggaggcuccauGGAGCCCC-CGuGc- -3'
miRNA:   3'- -CGGUCuGGGGC--------------CCUCGGGGaGCuCcu -5'
28772 5' -63.8 NC_006146.1 + 154249 0.66 0.60949
Target:  5'- aGCCAGGCCgCUGGuGGGCCUCagGuuGAc -3'
miRNA:   3'- -CGGUCUGG-GGCC-CUCGGGGagCucCU- -5'
28772 5' -63.8 NC_006146.1 + 126345 0.66 0.60949
Target:  5'- cGCCAG-CCaCCcGGAGCCCCggccccuuuUCcAGGAu -3'
miRNA:   3'- -CGGUCuGG-GGcCCUCGGGG---------AGcUCCU- -5'
28772 5' -63.8 NC_006146.1 + 164482 0.66 0.603751
Target:  5'- gGCCcacauGGCCCUGGGccaaagggaccccauGGCCCaa-GAGGAc -3'
miRNA:   3'- -CGGu----CUGGGGCCC---------------UCGGGgagCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 47022 0.66 0.599929
Target:  5'- gGUCGGACUCgCGGGcGCCCUgggugCGAGa- -3'
miRNA:   3'- -CGGUCUGGG-GCCCuCGGGGa----GCUCcu -5'
28772 5' -63.8 NC_006146.1 + 118968 0.66 0.599929
Target:  5'- cGCgCAGACCgcaCCGGGGccGCCCgUCGGugccucGGAg -3'
miRNA:   3'- -CG-GUCUGG---GGCCCU--CGGGgAGCU------CCU- -5'
28772 5' -63.8 NC_006146.1 + 45121 0.66 0.599929
Target:  5'- gGCCGguGACCgCCGGGAGCCuugggCUUUGcGGGc -3'
miRNA:   3'- -CGGU--CUGG-GGCCCUCGG-----GGAGCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 44987 0.66 0.599929
Target:  5'- gGCCGGACCCuucucuccagcuCGGuGAggccccaccGUCCCUCGAGa- -3'
miRNA:   3'- -CGGUCUGGG------------GCC-CU---------CGGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 102355 0.66 0.584677
Target:  5'- cGCCAGcGgUCCGGGcacucaaaggucuccGGgUCCUCGGGGAg -3'
miRNA:   3'- -CGGUC-UgGGGCCC---------------UCgGGGAGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 129032 0.66 0.584677
Target:  5'- cGCCAGaaaccucuucacgagGCCCCGGuAGCCCCUgGccacggcccGGGu -3'
miRNA:   3'- -CGGUC---------------UGGGGCCcUCGGGGAgC---------UCCu -5'
28772 5' -63.8 NC_006146.1 + 12841 0.66 0.580876
Target:  5'- gGCCGGACCCgaGGaGGCgCCUggggCGAGGc -3'
miRNA:   3'- -CGGUCUGGGg-CCcUCG-GGGa---GCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.