Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 3' | -65 | NC_006146.1 | + | 140744 | 0.66 | 0.57015 |
Target: 5'- --gGGuuGCCGCUCUCggaugcgUGGCcaugCCCACCCc -3' miRNA: 3'- gagCC--CGGCGAGAG-------ACCG----GGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 147742 | 0.66 | 0.561682 |
Target: 5'- -gCGGGCCGCgagcgaCUCUGugcaagcgaaGCCCaggcuCCCGg -3' miRNA: 3'- gaGCCCGGCGa-----GAGAC----------CGGGgu---GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 140701 | 0.66 | 0.561682 |
Target: 5'- --gGGGCUGg-UUCUGGCUCCGCUCc -3' miRNA: 3'- gagCCCGGCgaGAGACCGGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 135703 | 0.66 | 0.561682 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGu -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 166031 | 0.66 | 0.561682 |
Target: 5'- aUCgGGGgUGC-CUgUGGcCCCCGCCCc -3' miRNA: 3'- gAG-CCCgGCGaGAgACC-GGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 157376 | 0.66 | 0.561682 |
Target: 5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3' miRNA: 3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 141986 | 0.66 | 0.561682 |
Target: 5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3' miRNA: 3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 145064 | 0.66 | 0.561682 |
Target: 5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3' miRNA: 3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 148142 | 0.66 | 0.561682 |
Target: 5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3' miRNA: 3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 151220 | 0.66 | 0.561682 |
Target: 5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3' miRNA: 3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 154298 | 0.66 | 0.561682 |
Target: 5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3' miRNA: 3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 68321 | 0.66 | 0.552314 |
Target: 5'- cCUCGGGCCGCgagaggauggcgUCgaggacGGCCuCCGCCg- -3' miRNA: 3'- -GAGCCCGGCG------------AGaga---CCGG-GGUGGgc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 72573 | 0.66 | 0.542994 |
Target: 5'- -aCGGGCCGCgC-CcGGCCCCguGCCa- -3' miRNA: 3'- gaGCCCGGCGaGaGaCCGGGG--UGGgc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 141666 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 144743 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 147821 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 150899 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 153977 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 157055 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 109558 | 0.66 | 0.542994 |
Target: 5'- -aCGGGCaCGCUggugaaggugcCUCgccGGCUaggCCACCCGg -3' miRNA: 3'- gaGCCCG-GCGA-----------GAGa--CCGG---GGUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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