miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 140744 0.66 0.57015
Target:  5'- --gGGuuGCCGCUCUCggaugcgUGGCcaugCCCACCCc -3'
miRNA:   3'- gagCC--CGGCGAGAG-------ACCG----GGGUGGGc -5'
28774 3' -65 NC_006146.1 + 147742 0.66 0.561682
Target:  5'- -gCGGGCCGCgagcgaCUCUGugcaagcgaaGCCCaggcuCCCGg -3'
miRNA:   3'- gaGCCCGGCGa-----GAGAC----------CGGGgu---GGGC- -5'
28774 3' -65 NC_006146.1 + 140701 0.66 0.561682
Target:  5'- --gGGGCUGg-UUCUGGCUCCGCUCc -3'
miRNA:   3'- gagCCCGGCgaGAGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 135703 0.66 0.561682
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGu -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 166031 0.66 0.561682
Target:  5'- aUCgGGGgUGC-CUgUGGcCCCCGCCCc -3'
miRNA:   3'- gAG-CCCgGCGaGAgACC-GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 157376 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 141986 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 145064 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 148142 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 151220 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 154298 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 68321 0.66 0.552314
Target:  5'- cCUCGGGCCGCgagaggauggcgUCgaggacGGCCuCCGCCg- -3'
miRNA:   3'- -GAGCCCGGCG------------AGaga---CCGG-GGUGGgc -5'
28774 3' -65 NC_006146.1 + 72573 0.66 0.542994
Target:  5'- -aCGGGCCGCgC-CcGGCCCCguGCCa- -3'
miRNA:   3'- gaGCCCGGCGaGaGaCCGGGG--UGGgc -5'
28774 3' -65 NC_006146.1 + 141666 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 144743 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 147821 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 150899 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 153977 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 157055 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 109558 0.66 0.542994
Target:  5'- -aCGGGCaCGCUggugaaggugcCUCgccGGCUaggCCACCCGg -3'
miRNA:   3'- gaGCCCG-GCGA-----------GAGa--CCGG---GGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.