miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 106656 0.66 0.954789
Target:  5'- cGGCUGGUCaggGCcGUCcucuccccGGGCACGGg- -3'
miRNA:   3'- -CCGACCAGg--UGuUAGu-------CUCGUGCCgg -5'
28774 5' -55.1 NC_006146.1 + 41391 0.66 0.954789
Target:  5'- cGGCcGcUCCACGAacccgCAGAcGUagACGGCCg -3'
miRNA:   3'- -CCGaCcAGGUGUUa----GUCU-CG--UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114361 0.66 0.954789
Target:  5'- gGGcCUGGcCCGCGugacgcGUCAGcuGCugAUGGCCg -3'
miRNA:   3'- -CC-GACCaGGUGU------UAGUCu-CG--UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 109129 0.66 0.954789
Target:  5'- aGGCUGccGUCUugGgcAUCAGcAGCACcuGCCc -3'
miRNA:   3'- -CCGAC--CAGGugU--UAGUC-UCGUGc-CGG- -5'
28774 5' -55.1 NC_006146.1 + 58437 0.66 0.954788
Target:  5'- gGGUgGGUCUGgGGgucaCAGAGUAUGGCa -3'
miRNA:   3'- -CCGaCCAGGUgUUa---GUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 57239 0.66 0.954788
Target:  5'- cGgUGGUCCACGGgcccgUGGucAGCAaGGCCa -3'
miRNA:   3'- cCgACCAGGUGUUa----GUC--UCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 46617 0.66 0.954788
Target:  5'- cGGCcaGGUCUuCcAUCAGGGCcuugGgGGCCg -3'
miRNA:   3'- -CCGa-CCAGGuGuUAGUCUCG----UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 33326 0.66 0.954788
Target:  5'- gGGCUccggGGUCCGgGugcucCGGGGCAgccgggUGGCCg -3'
miRNA:   3'- -CCGA----CCAGGUgUua---GUCUCGU------GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 149631 0.66 0.954788
Target:  5'- gGGC--GUCCGCcagcaccaGGUC-GAGCACGcGCCg -3'
miRNA:   3'- -CCGacCAGGUG--------UUAGuCUCGUGC-CGG- -5'
28774 5' -55.1 NC_006146.1 + 100029 0.66 0.950796
Target:  5'- cGGCggGGUCCGCGGcuUCu---CGCGGUCg -3'
miRNA:   3'- -CCGa-CCAGGUGUU--AGucucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 110882 0.66 0.950796
Target:  5'- gGGCUcGGg-CGCAggCGGGGaCGgGGCCg -3'
miRNA:   3'- -CCGA-CCagGUGUuaGUCUC-GUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137570 0.66 0.950796
Target:  5'- uGCcgGGUCCGCugcccGGUCcuGGAGCucgGGCCg -3'
miRNA:   3'- cCGa-CCAGGUG-----UUAG--UCUCGug-CCGG- -5'
28774 5' -55.1 NC_006146.1 + 148229 0.66 0.950796
Target:  5'- ---aGGUUCugGGUCAGuauGCAgaGGCCg -3'
miRNA:   3'- ccgaCCAGGugUUAGUCu--CGUg-CCGG- -5'
28774 5' -55.1 NC_006146.1 + 52894 0.66 0.950796
Target:  5'- -aCUGGU-CACGGcCGuGAGCuACGGCCg -3'
miRNA:   3'- ccGACCAgGUGUUaGU-CUCG-UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 109462 0.66 0.949553
Target:  5'- aGCUGGagcucccccacgagUCCACcacuGUCGugaaaccuGAGgGCGGCCa -3'
miRNA:   3'- cCGACC--------------AGGUGu---UAGU--------CUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 112192 0.66 0.946574
Target:  5'- uGCUGGUggCCugGGUaguauuguuggaCAGGGUgGCGGCCu -3'
miRNA:   3'- cCGACCA--GGugUUA------------GUCUCG-UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 94012 0.66 0.946574
Target:  5'- uGGCUcccacgugcGGcCCgGCA---GGGGCACGGCCc -3'
miRNA:   3'- -CCGA---------CCaGG-UGUuagUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 54715 0.66 0.946574
Target:  5'- cGGCgGGcCCG-GGUCAGGGC--GGCCg -3'
miRNA:   3'- -CCGaCCaGGUgUUAGUCUCGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 83675 0.66 0.946574
Target:  5'- gGGUUGG-CCACc--CAGgugauGGCuGCGGCCg -3'
miRNA:   3'- -CCGACCaGGUGuuaGUC-----UCG-UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114962 0.66 0.942121
Target:  5'- uGGCgggGGgcaCGCAG-CAGccCACGGCCg -3'
miRNA:   3'- -CCGa--CCag-GUGUUaGUCucGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.