Results 1 - 20 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 106656 | 0.66 | 0.954789 |
Target: 5'- cGGCUGGUCaggGCcGUCcucuccccGGGCACGGg- -3' miRNA: 3'- -CCGACCAGg--UGuUAGu-------CUCGUGCCgg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 41391 | 0.66 | 0.954789 |
Target: 5'- cGGCcGcUCCACGAacccgCAGAcGUagACGGCCg -3' miRNA: 3'- -CCGaCcAGGUGUUa----GUCU-CG--UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 114361 | 0.66 | 0.954789 |
Target: 5'- gGGcCUGGcCCGCGugacgcGUCAGcuGCugAUGGCCg -3' miRNA: 3'- -CC-GACCaGGUGU------UAGUCu-CG--UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 109129 | 0.66 | 0.954789 |
Target: 5'- aGGCUGccGUCUugGgcAUCAGcAGCACcuGCCc -3' miRNA: 3'- -CCGAC--CAGGugU--UAGUC-UCGUGc-CGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 58437 | 0.66 | 0.954788 |
Target: 5'- gGGUgGGUCUGgGGgucaCAGAGUAUGGCa -3' miRNA: 3'- -CCGaCCAGGUgUUa---GUCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 57239 | 0.66 | 0.954788 |
Target: 5'- cGgUGGUCCACGGgcccgUGGucAGCAaGGCCa -3' miRNA: 3'- cCgACCAGGUGUUa----GUC--UCGUgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 46617 | 0.66 | 0.954788 |
Target: 5'- cGGCcaGGUCUuCcAUCAGGGCcuugGgGGCCg -3' miRNA: 3'- -CCGa-CCAGGuGuUAGUCUCG----UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 33326 | 0.66 | 0.954788 |
Target: 5'- gGGCUccggGGUCCGgGugcucCGGGGCAgccgggUGGCCg -3' miRNA: 3'- -CCGA----CCAGGUgUua---GUCUCGU------GCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 149631 | 0.66 | 0.954788 |
Target: 5'- gGGC--GUCCGCcagcaccaGGUC-GAGCACGcGCCg -3' miRNA: 3'- -CCGacCAGGUG--------UUAGuCUCGUGC-CGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 100029 | 0.66 | 0.950796 |
Target: 5'- cGGCggGGUCCGCGGcuUCu---CGCGGUCg -3' miRNA: 3'- -CCGa-CCAGGUGUU--AGucucGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 110882 | 0.66 | 0.950796 |
Target: 5'- gGGCUcGGg-CGCAggCGGGGaCGgGGCCg -3' miRNA: 3'- -CCGA-CCagGUGUuaGUCUC-GUgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137570 | 0.66 | 0.950796 |
Target: 5'- uGCcgGGUCCGCugcccGGUCcuGGAGCucgGGCCg -3' miRNA: 3'- cCGa-CCAGGUG-----UUAG--UCUCGug-CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 148229 | 0.66 | 0.950796 |
Target: 5'- ---aGGUUCugGGUCAGuauGCAgaGGCCg -3' miRNA: 3'- ccgaCCAGGugUUAGUCu--CGUg-CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 52894 | 0.66 | 0.950796 |
Target: 5'- -aCUGGU-CACGGcCGuGAGCuACGGCCg -3' miRNA: 3'- ccGACCAgGUGUUaGU-CUCG-UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 109462 | 0.66 | 0.949553 |
Target: 5'- aGCUGGagcucccccacgagUCCACcacuGUCGugaaaccuGAGgGCGGCCa -3' miRNA: 3'- cCGACC--------------AGGUGu---UAGU--------CUCgUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 112192 | 0.66 | 0.946574 |
Target: 5'- uGCUGGUggCCugGGUaguauuguuggaCAGGGUgGCGGCCu -3' miRNA: 3'- cCGACCA--GGugUUA------------GUCUCG-UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 94012 | 0.66 | 0.946574 |
Target: 5'- uGGCUcccacgugcGGcCCgGCA---GGGGCACGGCCc -3' miRNA: 3'- -CCGA---------CCaGG-UGUuagUCUCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 54715 | 0.66 | 0.946574 |
Target: 5'- cGGCgGGcCCG-GGUCAGGGC--GGCCg -3' miRNA: 3'- -CCGaCCaGGUgUUAGUCUCGugCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 83675 | 0.66 | 0.946574 |
Target: 5'- gGGUUGG-CCACc--CAGgugauGGCuGCGGCCg -3' miRNA: 3'- -CCGACCaGGUGuuaGUC-----UCG-UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 114962 | 0.66 | 0.942121 |
Target: 5'- uGGCgggGGgcaCGCAG-CAGccCACGGCCg -3' miRNA: 3'- -CCGa--CCag-GUGUUaGUCucGUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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