miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 3' -55.2 NC_006146.1 + 47744 0.65 0.95448
Target:  5'- --uUGGAGGGgCUGGCCcuggggacggagaGCGGCCUCu -3'
miRNA:   3'- acuACCUUCUgGACCGGc------------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 101306 0.66 0.953697
Target:  5'- --cUGGAcgucucgcugccccaGGACCUGGCCauCuuCCCCc -3'
miRNA:   3'- acuACCU---------------UCUGGACCGGcuGuuGGGG- -5'
28775 3' -55.2 NC_006146.1 + 170085 0.66 0.953697
Target:  5'- gGAUGGccggcgggaGGGGCCggcgccgcagggggGGCCGGCGGggcgUCCCg -3'
miRNA:   3'- aCUACC---------UUCUGGa-------------CCGGCUGUU----GGGG- -5'
28775 3' -55.2 NC_006146.1 + 59996 0.66 0.952105
Target:  5'- -cAUGGAGuGCaaGGCCaacGCGGCCCCg -3'
miRNA:   3'- acUACCUUcUGgaCCGGc--UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 99080 0.66 0.952105
Target:  5'- gUGGUGGAGGGCCcgcagccaGGuCCGcACGuCCCg -3'
miRNA:   3'- -ACUACCUUCUGGa-------CC-GGC-UGUuGGGg -5'
28775 3' -55.2 NC_006146.1 + 33153 0.66 0.952105
Target:  5'- gGGUGGggGgugGCCcGGCUGGgcACCgCCg -3'
miRNA:   3'- aCUACCuuC---UGGaCCGGCUguUGG-GG- -5'
28775 3' -55.2 NC_006146.1 + 10667 0.66 0.952105
Target:  5'- gGAcgGGGAGGCCcgGGgCGAU-ACCCg -3'
miRNA:   3'- aCUa-CCUUCUGGa-CCgGCUGuUGGGg -5'
28775 3' -55.2 NC_006146.1 + 90551 0.66 0.949647
Target:  5'- cGGUGGAgcagggcccgggagaAGACCcGGgaGAaGGCCCCa -3'
miRNA:   3'- aCUACCU---------------UCUGGaCCggCUgUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 54227 0.66 0.947963
Target:  5'- gGAUGGGgcgGGAgCaGaGCCucugGGCGGCCCCg -3'
miRNA:   3'- aCUACCU---UCUgGaC-CGG----CUGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 45805 0.66 0.947963
Target:  5'- cGA-GGAAGGCCgccGCC-ACGGCCgCCu -3'
miRNA:   3'- aCUaCCUUCUGGac-CGGcUGUUGG-GG- -5'
28775 3' -55.2 NC_006146.1 + 164214 0.66 0.947963
Target:  5'- gGAUGGAGGACUauccgGGCC-AUuguuACCaCCa -3'
miRNA:   3'- aCUACCUUCUGGa----CCGGcUGu---UGG-GG- -5'
28775 3' -55.2 NC_006146.1 + 146682 0.66 0.947963
Target:  5'- cGGUGGgcGGCCccGGCCccaACAgACCUCg -3'
miRNA:   3'- aCUACCuuCUGGa-CCGGc--UGU-UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 25708 0.66 0.947963
Target:  5'- -aGUGGAAG-CCgGGCC---AGCCCCu -3'
miRNA:   3'- acUACCUUCuGGaCCGGcugUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 69979 0.66 0.947963
Target:  5'- gGAUGGccAAGAacagcacGGUCGGgGACCCCa -3'
miRNA:   3'- aCUACC--UUCUgga----CCGGCUgUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 117973 0.66 0.947963
Target:  5'- aGgcGGcGGACgaGGCCaGCGcCCCCg -3'
miRNA:   3'- aCuaCCuUCUGgaCCGGcUGUuGGGG- -5'
28775 3' -55.2 NC_006146.1 + 103108 0.66 0.947963
Target:  5'- gGcgGGGcAGAgCCUGGCCGccgucACGuCCCUg -3'
miRNA:   3'- aCuaCCU-UCU-GGACCGGC-----UGUuGGGG- -5'
28775 3' -55.2 NC_006146.1 + 42880 0.66 0.947963
Target:  5'- cUGGUGGGAGGCgaaggggGGCaCGuCcuCCCCa -3'
miRNA:   3'- -ACUACCUUCUGga-----CCG-GCuGuuGGGG- -5'
28775 3' -55.2 NC_006146.1 + 59587 0.66 0.947963
Target:  5'- aGGUGGc-GAUCUGGagggCGGCGuCCCCc -3'
miRNA:   3'- aCUACCuuCUGGACCg---GCUGUuGGGG- -5'
28775 3' -55.2 NC_006146.1 + 161983 0.66 0.947963
Target:  5'- -cGUGGGAGACCggcuccacGGUgGAUAggcACCCUg -3'
miRNA:   3'- acUACCUUCUGGa-------CCGgCUGU---UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 122025 0.66 0.943591
Target:  5'- aGA-GGcgcAGGCCUggcgccuggaGGCCGACGGCUUCg -3'
miRNA:   3'- aCUaCCu--UCUGGA----------CCGGCUGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.