Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28775 | 5' | -61.6 | NC_006146.1 | + | 11344 | 0.68 | 0.551459 |
Target: 5'- -aGACGCUGUacacgggccUGGCGCagGCGCUGCgCg -3' miRNA: 3'- uaCUGCGACG---------ACCGCG--UGCGGUGgGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 16201 | 0.67 | 0.610654 |
Target: 5'- gGUGG-GCUGCaucugGGCGCAgaCCACCCa -3' miRNA: 3'- -UACUgCGACGa----CCGCGUgcGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 115553 | 0.67 | 0.600712 |
Target: 5'- gGUGGCggggGCUGgaGGCGaC-CGCgGCCCUa -3' miRNA: 3'- -UACUG----CGACgaCCGC-GuGCGgUGGGA- -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 25855 | 0.67 | 0.600712 |
Target: 5'- --aGCGCcaggGCUGcGCGCucACGCUGCCCg -3' miRNA: 3'- uacUGCGa---CGAC-CGCG--UGCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 92251 | 0.67 | 0.600712 |
Target: 5'- uGUGGCuGCUGCUGGgGgGCGggcCCGgCCUg -3' miRNA: 3'- -UACUG-CGACGACCgCgUGC---GGUgGGA- -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 3690 | 0.67 | 0.580901 |
Target: 5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3' miRNA: 3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 2758 | 0.67 | 0.580901 |
Target: 5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3' miRNA: 3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 1826 | 0.67 | 0.580901 |
Target: 5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3' miRNA: 3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 894 | 0.67 | 0.580901 |
Target: 5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3' miRNA: 3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 21255 | 0.67 | 0.610654 |
Target: 5'- --cGCGCUGCcGGCGCGUGCUcgACCUg -3' miRNA: 3'- uacUGCGACGaCCGCGUGCGG--UGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 41481 | 0.67 | 0.610654 |
Target: 5'- gGUGAUGUUGCUgggccuuggGGUGCGCGgggacgaCGCCCg -3' miRNA: 3'- -UACUGCGACGA---------CCGCGUGCg------GUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 136722 | 0.67 | 0.610654 |
Target: 5'- cUGGCccaggguccgGCUGggGGCGCACcccCCACCCUc -3' miRNA: 3'- uACUG----------CGACgaCCGCGUGc--GGUGGGA- -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 128528 | 0.66 | 0.670376 |
Target: 5'- -gGACGUUGC-GGCuCACGaCCGCCa- -3' miRNA: 3'- uaCUGCGACGaCCGcGUGC-GGUGGga -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 50484 | 0.66 | 0.670376 |
Target: 5'- uUGACGUUGaUGGCcagGUugGCC-CCCa -3' miRNA: 3'- uACUGCGACgACCG---CGugCGGuGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 123363 | 0.66 | 0.660451 |
Target: 5'- -gGA-GCU-CUGGCGCugGCCggggGCCCc -3' miRNA: 3'- uaCUgCGAcGACCGCGugCGG----UGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 110292 | 0.66 | 0.650504 |
Target: 5'- cAUGAUgGCcucgGCguaGGCGUucauCGCCGCCCUg -3' miRNA: 3'- -UACUG-CGa---CGa--CCGCGu---GCGGUGGGA- -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 127527 | 0.66 | 0.650504 |
Target: 5'- -aGcCGCUGCUGccccCGCuaaGCCACCCc -3' miRNA: 3'- uaCuGCGACGACc---GCGug-CGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 20719 | 0.66 | 0.649509 |
Target: 5'- -aGAaGCUGCUGGCGgccugcgaggaccCGCGCCAaaagaCCa -3' miRNA: 3'- uaCUgCGACGACCGC-------------GUGCGGUg----GGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 120760 | 0.66 | 0.630577 |
Target: 5'- -cGACGagcGCUGGCG-GCGCCucauguCCCUg -3' miRNA: 3'- uaCUGCga-CGACCGCgUGCGGu-----GGGA- -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 14627 | 0.66 | 0.62958 |
Target: 5'- cUGGCGCUGCgugggggagcucaUGGUGCugcccaaccACGgCACCCc -3' miRNA: 3'- uACUGCGACG-------------ACCGCG---------UGCgGUGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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