miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 170396 0.69 0.334484
Target:  5'- gGCCUCC-CCUggggGCCUCGGGGgCGgaggggggggucCCGCg -3'
miRNA:   3'- -CGGAGGcGGG----CGGAGCCUCgGC------------GGCG- -5'
28776 3' -65.9 NC_006146.1 + 169465 0.69 0.334484
Target:  5'- gGCCUCC-CCUggggGCCUCGGGGgCGgaggggggggucCCGCg -3'
miRNA:   3'- -CGGAGGcGGG----CGGAGCCUCgGC------------GGCG- -5'
28776 3' -65.9 NC_006146.1 + 168533 0.69 0.334484
Target:  5'- gGCCUCC-CCUggggGCCUCGGGGgCGgaggggggggucCCGCg -3'
miRNA:   3'- -CGGAGGcGGG----CGGAGCCUCgGC------------GGCG- -5'
28776 3' -65.9 NC_006146.1 + 167601 0.69 0.334484
Target:  5'- gGCCUCC-CCUggggGCCUCGGGGgCGgaggggggggucCCGCg -3'
miRNA:   3'- -CGGAGGcGGG----CGGAGCCUCgGC------------GGCG- -5'
28776 3' -65.9 NC_006146.1 + 166725 0.75 0.142338
Target:  5'- cGCCga-GCCCGUCUCGGGGCaggaggccgaGCCGUa -3'
miRNA:   3'- -CGGaggCGGGCGGAGCCUCGg---------CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 166525 0.69 0.378104
Target:  5'- gGCgUCgGCCUggggaGCCcgCGGGGCCGUgGCc -3'
miRNA:   3'- -CGgAGgCGGG-----CGGa-GCCUCGGCGgCG- -5'
28776 3' -65.9 NC_006146.1 + 163199 0.66 0.520396
Target:  5'- gGCUUCUGCCC-CUcagaGGAGCCgggcagGCCGUa -3'
miRNA:   3'- -CGGAGGCGGGcGGag--CCUCGG------CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 159265 0.72 0.22628
Target:  5'- uGCaacgCCGCCacgcggGCCUCGGGGCCcUCGCa -3'
miRNA:   3'- -CGga--GGCGGg-----CGGAGCCUCGGcGGCG- -5'
28776 3' -65.9 NC_006146.1 + 158054 0.71 0.25863
Target:  5'- aGCCUCgccccaggCGCCU-CCUCGGguccGGCCGCCGg -3'
miRNA:   3'- -CGGAG--------GCGGGcGGAGCC----UCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 157217 0.72 0.223241
Target:  5'- gGCCUCCagGCCCGCCcugauguucucaaucUCauaGGuGGCCGCUGCc -3'
miRNA:   3'- -CGGAGG--CGGGCGG---------------AG---CC-UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 156501 0.84 0.03406
Target:  5'- uCCUgUGCCCGCCUCGGGGCUGCCu- -3'
miRNA:   3'- cGGAgGCGGGCGGAGCCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 156097 0.66 0.497099
Target:  5'- uCCUCCgGCCCGgC-CGGccucuccuuccccucAGCCGCCa- -3'
miRNA:   3'- cGGAGG-CGGGCgGaGCC---------------UCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 155605 0.72 0.216284
Target:  5'- gGCCUCCgGCCCcuccucccccucGCUcCGGuucAGCCGCUGCa -3'
miRNA:   3'- -CGGAGG-CGGG------------CGGaGCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 154976 0.71 0.252429
Target:  5'- aGCCUCgcccaggCGCCU-CCUCGGguccGGCCGCCGg -3'
miRNA:   3'- -CGGAG-------GCGGGcGGAGCC----UCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 153468 0.79 0.084423
Target:  5'- cCCUCCGCCUGCCUCcGucgacggcgcacaauGGCCGCUGCc -3'
miRNA:   3'- cGGAGGCGGGCGGAGcC---------------UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 153423 0.84 0.03406
Target:  5'- uCCUgUGCCCGCCUCGGGGCUGCCu- -3'
miRNA:   3'- cGGAgGCGGGCGGAGCCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 151931 0.71 0.270224
Target:  5'- gGCCcugCCGCCC-UCUCuaGGGGCCGCUGg -3'
miRNA:   3'- -CGGa--GGCGGGcGGAG--CCUCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 151898 0.71 0.252429
Target:  5'- aGCCUCgcccaggCGCCU-CCUCGGguccGGCCGCCGg -3'
miRNA:   3'- -CGGAG-------GCGGGcGGAGCC----UCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 150711 0.66 0.520396
Target:  5'- aGCCUCCugcGCCC-CCg-GGGGCCcuCUGCa -3'
miRNA:   3'- -CGGAGG---CGGGcGGagCCUCGGc-GGCG- -5'
28776 3' -65.9 NC_006146.1 + 150345 0.84 0.03406
Target:  5'- uCCUgUGCCCGCCUCGGGGCUGCCu- -3'
miRNA:   3'- cGGAgGCGGGCGGAGCCUCGGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.