miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 75602 0.67 0.465647
Target:  5'- cGCCUaCUGCCCcaccgucuacagcGCCuUCGGguucaagAGCCGCCa- -3'
miRNA:   3'- -CGGA-GGCGGG-------------CGG-AGCC-------UCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 117851 0.66 0.493556
Target:  5'- uCC-CCaCCCGCCccccuuaccucUCGGcGGCgGCCGCg -3'
miRNA:   3'- cGGaGGcGGGCGG-----------AGCC-UCGgCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 76934 0.67 0.48475
Target:  5'- aGCCgggugaacugCCGCUggagguCGCCUgggacggagagCGGAGCCccGCCGCc -3'
miRNA:   3'- -CGGa---------GGCGG------GCGGA-----------GCCUCGG--CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 115639 0.67 0.476019
Target:  5'- aGCCccacgagCCGCuUCGCC-CGG-GCCGCCcggGCg -3'
miRNA:   3'- -CGGa------GGCG-GGCGGaGCCuCGGCGG---CG- -5'
28776 3' -65.9 NC_006146.1 + 123244 0.67 0.467367
Target:  5'- cCCUggCCGCCgCGCUgggcCGG-GCCGCgGCc -3'
miRNA:   3'- cGGA--GGCGG-GCGGa---GCCuCGGCGgCG- -5'
28776 3' -65.9 NC_006146.1 + 17300 0.67 0.467367
Target:  5'- uGCCUCUGacCCCGCgCUCGuuGGCCuCCGUc -3'
miRNA:   3'- -CGGAGGC--GGGCG-GAGCc-UCGGcGGCG- -5'
28776 3' -65.9 NC_006146.1 + 124465 0.67 0.467367
Target:  5'- cGCCgCCGCCUuCCUgGGGGCCcCCu- -3'
miRNA:   3'- -CGGaGGCGGGcGGAgCCUCGGcGGcg -5'
28776 3' -65.9 NC_006146.1 + 115239 0.67 0.467367
Target:  5'- gGCCUucaacgCCGCCUGgCUCcG-GCUGCUGCa -3'
miRNA:   3'- -CGGA------GGCGGGCgGAGcCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 68330 0.67 0.467367
Target:  5'- aCCUgCaCGCUCGgCUCGGAcCUGCUGCu -3'
miRNA:   3'- cGGA-G-GCGGGCgGAGCCUcGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 795 0.66 0.501544
Target:  5'- cGCC-CCGCCgGCCcccccugCGGcGCCGgccccucCCGCc -3'
miRNA:   3'- -CGGaGGCGGgCGGa------GCCuCGGC-------GGCG- -5'
28776 3' -65.9 NC_006146.1 + 24757 0.66 0.502435
Target:  5'- aGCCUCCG-CCGCCUgCGuc-CCGCUGa -3'
miRNA:   3'- -CGGAGGCgGGCGGA-GCcucGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 62600 0.66 0.511383
Target:  5'- gGCgUCCGCCgcagGCaaugagCgGGAGCUGCUGCg -3'
miRNA:   3'- -CGgAGGCGGg---CGga----G-CCUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 128019 0.66 0.539519
Target:  5'- aGCgUCgGCCCGCaaaguuaaauacaGGAGCUGCCu- -3'
miRNA:   3'- -CGgAGgCGGGCGgag----------CCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 71982 0.66 0.538603
Target:  5'- aCCUCCGCCCaucCUUUGGAGgagaccCUGgCGCg -3'
miRNA:   3'- cGGAGGCGGGc--GGAGCCUC------GGCgGCG- -5'
28776 3' -65.9 NC_006146.1 + 70734 0.66 0.538603
Target:  5'- gGCUUaUUGCCCcCCUcgCGGAcGCCGCCGa -3'
miRNA:   3'- -CGGA-GGCGGGcGGA--GCCU-CGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 129841 0.66 0.537687
Target:  5'- cGCCcCCGUCCGagcgagcCCUCGGAaGCUGUCc- -3'
miRNA:   3'- -CGGaGGCGGGC-------GGAGCCU-CGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 122989 0.66 0.520396
Target:  5'- uCCUCCagGCCaCGggggacuucuUCUCGGAGCUGCUGa -3'
miRNA:   3'- cGGAGG--CGG-GC----------GGAGCCUCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 110280 0.66 0.520396
Target:  5'- aGCCccgUCUGCCaugaugGCCUCGGcguaGGCguucauCGCCGCc -3'
miRNA:   3'- -CGG---AGGCGGg-----CGGAGCC----UCG------GCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 42705 0.66 0.517685
Target:  5'- gGCCcggcgCCGCggcgccccccugggCCGCCUccCGGcGUCGCUGCa -3'
miRNA:   3'- -CGGa----GGCG--------------GGCGGA--GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 24396 0.66 0.512281
Target:  5'- cGCCUUCGCUCuCCggguuuacguuccaGGAgGCCGCCuGCa -3'
miRNA:   3'- -CGGAGGCGGGcGGag------------CCU-CGGCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.