miRNA display CGI


Results 1 - 20 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 170437 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170388 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170350 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 170204 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170099 0.67 0.619155
Target:  5'- aGGGGCCGgcgCcgCagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGUa--GuaGg-UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170041 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169979 0.68 0.55074
Target:  5'- gGAGGCCGgcgCGcgCCcGGGGuCCCGGGGg -3'
miRNA:   3'- -CUCCGGUa--GUa-GGuCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169576 0.66 0.6977
Target:  5'- cGGGGCCcgagcgcgCGUCgGGuGGGGCCUGaGGGg -3'
miRNA:   3'- -CUCCGGua------GUAGgUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 169506 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169457 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169419 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 169273 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169167 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169109 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169047 0.68 0.55074
Target:  5'- gGAGGCCGgcgCGcgCCcGGGGuCCCGGGGg -3'
miRNA:   3'- -CUCCGGUa--GUa-GGuCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168574 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168525 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168487 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 168482 0.72 0.358267
Target:  5'- -cGGCCucaCGUCCacggucGGGGGGCCgGGGAc -3'
miRNA:   3'- cuCCGGua-GUAGG------UCCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168341 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.