miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 125187 0.66 0.930227
Target:  5'- cAGGGuCGUGGCCCcgcuGCUCUAcUGcGACg -3'
miRNA:   3'- -UCUC-GUACCGGGucu-UGAGGU-AC-CUG- -5'
28778 3' -55.4 NC_006146.1 + 19660 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 25816 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 28894 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 142949 0.66 0.930227
Target:  5'- cAGAGgaGUGGCCCuuGAAUgcaugCCAggGGGCu -3'
miRNA:   3'- -UCUCg-UACCGGGu-CUUGa----GGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 13504 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 16582 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 22738 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 30921 0.66 0.930227
Target:  5'- ----gGUGGCCCAGGGgggagcccgUUUCGUGGGCg -3'
miRNA:   3'- ucucgUACCGGGUCUU---------GAGGUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 55914 0.66 0.930227
Target:  5'- -cGGcCAUGGCCUuGAugUCCgcggccGUGGGCu -3'
miRNA:   3'- ucUC-GUACCGGGuCUugAGG------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 21095 0.66 0.930227
Target:  5'- cGGAGCcuguuuGUGGCCCccauCUCCcUGGAg -3'
miRNA:   3'- -UCUCG------UACCGGGucuuGAGGuACCUg -5'
28778 3' -55.4 NC_006146.1 + 59634 0.66 0.930227
Target:  5'- aAGuGCuccaGGCCCAGGACaaugacccuaUCCG-GGGCa -3'
miRNA:   3'- -UCuCGua--CCGGGUCUUG----------AGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 10670 0.66 0.930227
Target:  5'- cGGGGa--GGCCCGGGGCgauacCCGcGGGCa -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa----GGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 116399 0.66 0.924878
Target:  5'- gGGAGCggGGCCCuggGGAGuCUCCucccacGACg -3'
miRNA:   3'- -UCUCGuaCCGGG---UCUU-GAGGuac---CUG- -5'
28778 3' -55.4 NC_006146.1 + 64710 0.66 0.924878
Target:  5'- -uGGCAggaGGCCCGGGAC-CCGUGucaGCa -3'
miRNA:   3'- ucUCGUa--CCGGGUCUUGaGGUACc--UG- -5'
28778 3' -55.4 NC_006146.1 + 56676 0.66 0.924878
Target:  5'- aGGuGCcgGGCCCccuGGGGCUggcCCugcUGGACa -3'
miRNA:   3'- -UCuCGuaCCGGG---UCUUGA---GGu--ACCUG- -5'
28778 3' -55.4 NC_006146.1 + 46501 0.66 0.924878
Target:  5'- cGGGCuUGaGCCCGGAggcACUC--UGGGCg -3'
miRNA:   3'- uCUCGuAC-CGGGUCU---UGAGguACCUG- -5'
28778 3' -55.4 NC_006146.1 + 139960 0.66 0.924878
Target:  5'- cAGAGCAUGcgaaccGCCCAcGAaacggcGCUCCccccUGGGCc -3'
miRNA:   3'- -UCUCGUAC------CGGGU-CU------UGAGGu---ACCUG- -5'
28778 3' -55.4 NC_006146.1 + 160054 0.66 0.923226
Target:  5'- gAGAGCcguAUGGCCUgcuggcuggcuucGGAGCcuaucucauggcCCAUGGGCg -3'
miRNA:   3'- -UCUCG---UACCGGG-------------UCUUGa-----------GGUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 55430 0.66 0.921552
Target:  5'- -uGGCAUGacaaaugucaauggaGCuCCAGGACUCUgucAUGGGCa -3'
miRNA:   3'- ucUCGUAC---------------CG-GGUCUUGAGG---UACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.