miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 3' -62.9 NC_006146.1 + 87365 0.66 0.691232
Target:  5'- -aCUGGAUGACaAGCUgUGGGCcCUGa -3'
miRNA:   3'- ggGGCCUGCUGcUCGAgGCCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 34618 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34525 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34432 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34339 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34246 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34153 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34060 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 33967 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34711 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34804 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34897 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35640 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35547 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35454 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35361 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35268 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35175 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35082 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34989 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.