miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 5' -57.8 NC_006146.1 + 47245 0.66 0.882933
Target:  5'- ---uGGCGCGGGUCgacGuGGCCCCUg -3'
miRNA:   3'- ccagUUGUGCCUAGac-CuCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 126798 0.66 0.882933
Target:  5'- cGGgCAGC-CGGGgcCUGGAGGUUUCCg -3'
miRNA:   3'- -CCaGUUGuGCCUa-GACCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 61490 0.66 0.882933
Target:  5'- aGGaUCAcCAgGGcUCcgaGGAGGCCCCUg -3'
miRNA:   3'- -CC-AGUuGUgCCuAGa--CCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 162956 0.66 0.876005
Target:  5'- cGUUGGCAuCGGAgUUGGcGGGCgCCCCUu -3'
miRNA:   3'- cCAGUUGU-GCCUaGACC-UCCG-GGGGA- -5'
28780 5' -57.8 NC_006146.1 + 40346 0.66 0.875301
Target:  5'- uGGUaGGCGuggGGAUCUGcGgcggagaAGGCCCCCUg -3'
miRNA:   3'- -CCAgUUGUg--CCUAGAC-C-------UCCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 48238 0.66 0.868869
Target:  5'- gGGUgAGCGCcGcgC-GGAgGGCCCCCg -3'
miRNA:   3'- -CCAgUUGUGcCuaGaCCU-CCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 153678 0.66 0.868869
Target:  5'- uGGUCcuucACAUaGGGUcCUGGAGGgCCUCg -3'
miRNA:   3'- -CCAGu---UGUG-CCUA-GACCUCCgGGGGa -5'
28780 5' -57.8 NC_006146.1 + 42211 0.66 0.861531
Target:  5'- uGGUgAACuCGuGUCUGcGAGGCgCCCg -3'
miRNA:   3'- -CCAgUUGuGCcUAGAC-CUCCGgGGGa -5'
28780 5' -57.8 NC_006146.1 + 90976 0.66 0.861531
Target:  5'- gGGUCAGguCaGGGUUucgGGAaGCCCCCg -3'
miRNA:   3'- -CCAGUUguG-CCUAGa--CCUcCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 73411 0.66 0.853995
Target:  5'- aGGUC---GCGGAUgUuGAGGUCCCCc -3'
miRNA:   3'- -CCAGuugUGCCUAgAcCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 13690 0.66 0.853995
Target:  5'- -aUCAGgGCGGGcCUGGAGGCCa--- -3'
miRNA:   3'- ccAGUUgUGCCUaGACCUCCGGggga -5'
28780 5' -57.8 NC_006146.1 + 19976 0.67 0.838354
Target:  5'- cGUCu--GCGaGGUCaGGAGGCCCCa- -3'
miRNA:   3'- cCAGuugUGC-CUAGaCCUCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 75398 0.67 0.830262
Target:  5'- --aCAGCuccCGGAUaUGGAGGCCUUCUc -3'
miRNA:   3'- ccaGUUGu--GCCUAgACCUCCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 109282 0.67 0.830262
Target:  5'- aGGUCGuaGCugGGAg--GGAucucGGCCCCg- -3'
miRNA:   3'- -CCAGU--UGugCCUagaCCU----CCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 137793 0.67 0.830262
Target:  5'- uGGUCcGC-CGGAUCcgcuucGGGGGUCCgCCg -3'
miRNA:   3'- -CCAGuUGuGCCUAGa-----CCUCCGGG-GGa -5'
28780 5' -57.8 NC_006146.1 + 106175 0.67 0.8278
Target:  5'- aGUCAuccccggccugcugACACGGGUCcc-GGGCCUCCUg -3'
miRNA:   3'- cCAGU--------------UGUGCCUAGaccUCCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 149992 0.67 0.821998
Target:  5'- aGGUCGGC-CGGA-CUcaGGGCCUCCa -3'
miRNA:   3'- -CCAGUUGuGCCUaGAccUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 49516 0.67 0.821998
Target:  5'- uGGaUCGGCGgGuGAUCcGGGGGCUCCUc -3'
miRNA:   3'- -CC-AGUUGUgC-CUAGaCCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 146269 0.67 0.804984
Target:  5'- cGGUgGACGCGcGAcgUGGcGGCCCCa- -3'
miRNA:   3'- -CCAgUUGUGC-CUagACCuCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 18982 0.67 0.804984
Target:  5'- aGGgCGGCAgggcCGGAgCcagaccccagUGGGGGCCCCCUc -3'
miRNA:   3'- -CCaGUUGU----GCCUaG----------ACCUCCGGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.