miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 3' -59.3 NC_006146.1 + 117937 0.66 0.82574
Target:  5'- cCCCGCC-CCGcGGAG-GGCcaUGAAcGGUa -3'
miRNA:   3'- -GGGCGGaGGCuCCUCgUCG--ACUU-CCG- -5'
28782 3' -59.3 NC_006146.1 + 135774 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 135867 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 135960 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 135217 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 135310 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 135403 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 53780 0.66 0.82574
Target:  5'- uCUCGCCggaCGAGGGccucggcccgcGCGGCguccauagcgGggGGCu -3'
miRNA:   3'- -GGGCGGag-GCUCCU-----------CGUCGa---------CuuCCG- -5'
28782 3' -59.3 NC_006146.1 + 136053 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 135682 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 135496 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 136146 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5'
28782 3' -59.3 NC_006146.1 + 111878 0.66 0.82574
Target:  5'- aCCGCCagCGGuGcguucaccaGGCAGCgcgGGAGGCa -3'
miRNA:   3'- gGGCGGagGCUcC---------UCGUCGa--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 156704 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 153627 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 150549 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 147471 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 144393 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 141315 0.66 0.82574
Target:  5'- gCUgGCCUgCCaGGGGGCaaagggGGCUcaGAGGGCa -3'
miRNA:   3'- -GGgCGGA-GGcUCCUCG------UCGA--CUUCCG- -5'
28782 3' -59.3 NC_006146.1 + 137540 0.66 0.82574
Target:  5'- cCCCG-CUCCGgcgGGGGGUGGCc--GGGCc -3'
miRNA:   3'- -GGGCgGAGGC---UCCUCGUCGacuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.