miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 3' -60.4 NC_006146.1 + 168629 0.66 0.776171
Target:  5'- aGCgGggGGCuUCCCCgggGCCCGAGcgCGc -3'
miRNA:   3'- gCGgUa-UCG-GGGGGa--CGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 169561 0.66 0.776171
Target:  5'- aGCgGggGGCuUCCCCgggGCCCGAGcgCGc -3'
miRNA:   3'- gCGgUa-UCG-GGGGGa--CGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 167696 0.66 0.776171
Target:  5'- aGCgGggGGCuUCCCCgggGCCCGAGcgCGc -3'
miRNA:   3'- gCGgUa-UCG-GGGGGa--CGGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 60027 0.66 0.758
Target:  5'- cCGCCu--GCgCCCgaGCCCGAGa--- -3'
miRNA:   3'- -GCGGuauCGgGGGgaCGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 44833 0.66 0.758
Target:  5'- gGCCGgcGCCCCUCgUGCCCGuuUa-- -3'
miRNA:   3'- gCGGUauCGGGGGG-ACGGGCucAagc -5'
28783 3' -60.4 NC_006146.1 + 911 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 1843 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 2775 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 3707 0.66 0.758
Target:  5'- gCGCC---GCCCCCCgggacCCCGGGcgCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGac---GGGCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 51756 0.66 0.752465
Target:  5'- aGCCcgacacgcguaaaagGUGGCCUCUCUGCCCaGAGc-CGa -3'
miRNA:   3'- gCGG---------------UAUCGGGGGGACGGG-CUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 42697 0.66 0.748756
Target:  5'- gGCUGgcagAGCCCCCCagcGCCCGc--UCGg -3'
miRNA:   3'- gCGGUa---UCGGGGGGa--CGGGCucaAGC- -5'
28783 3' -60.4 NC_006146.1 + 24228 0.66 0.748756
Target:  5'- gGCCGgGGCCgCCCaccGCCCGGGa--- -3'
miRNA:   3'- gCGGUaUCGGgGGGa--CGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 71505 0.66 0.748756
Target:  5'- uGCCGgcaCCCCCCUGgCCGAc-UCGc -3'
miRNA:   3'- gCGGUaucGGGGGGACgGGCUcaAGC- -5'
28783 3' -60.4 NC_006146.1 + 20939 0.66 0.748756
Target:  5'- gGCCcUGGCCCCCaCUcccacGCCUGGGcgCc -3'
miRNA:   3'- gCGGuAUCGGGGG-GA-----CGGGCUCaaGc -5'
28783 3' -60.4 NC_006146.1 + 33309 0.66 0.748756
Target:  5'- gGCacccGGCCCCCg-GCCCGAGcUCc -3'
miRNA:   3'- gCGgua-UCGGGGGgaCGGGCUCaAGc -5'
28783 3' -60.4 NC_006146.1 + 44373 0.66 0.739417
Target:  5'- uGCCAga--CCCCC-GCCCGGGgggCGu -3'
miRNA:   3'- gCGGUaucgGGGGGaCGGGCUCaa-GC- -5'
28783 3' -60.4 NC_006146.1 + 137973 0.66 0.739417
Target:  5'- gGCCG-GGCCUCCCggggGCCCGgcGGggUGg -3'
miRNA:   3'- gCGGUaUCGGGGGGa---CGGGC--UCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 159034 0.66 0.729991
Target:  5'- uGCCAgucaacgucgGGCCCgCCCcaaGCCCGAGa--- -3'
miRNA:   3'- gCGGUa---------UCGGG-GGGa--CGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 127541 0.66 0.729991
Target:  5'- cCGCUA-AGCcaCCCCCUGCCaCGGGcugCGc -3'
miRNA:   3'- -GCGGUaUCG--GGGGGACGG-GCUCaa-GC- -5'
28783 3' -60.4 NC_006146.1 + 84814 0.67 0.720486
Target:  5'- aGCUcgagAGCCCCCCUGCCUa------ -3'
miRNA:   3'- gCGGua--UCGGGGGGACGGGcucaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.