miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 5' -49.8 NC_006146.1 + 115156 0.66 0.998624
Target:  5'- cGCCGccGGGCGGuGGAGAuCUUG-GGCg -3'
miRNA:   3'- -CGGCuuUUCGUC-UUUCUcGAGCuCCG- -5'
28783 5' -49.8 NC_006146.1 + 157865 0.66 0.998624
Target:  5'- cGCCugGAAAAGUugugccacAGguAGAgGCUCGAGaGCu -3'
miRNA:   3'- -CGG--CUUUUCG--------UCuuUCU-CGAGCUC-CG- -5'
28783 5' -49.8 NC_006146.1 + 45047 0.66 0.998624
Target:  5'- gGCCGggGccGGCucccuAGGGGCggcUGAGGUg -3'
miRNA:   3'- -CGGCuuU--UCGucu--UUCUCGa--GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 42264 0.66 0.998624
Target:  5'- cCCGAAu-GCGGGAGGAGgaUG-GGUg -3'
miRNA:   3'- cGGCUUuuCGUCUUUCUCgaGCuCCG- -5'
28783 5' -49.8 NC_006146.1 + 99159 0.66 0.998624
Target:  5'- aCCGGcagguGGCGGAGGGccAGCUCGuAGaGCc -3'
miRNA:   3'- cGGCUuu---UCGUCUUUC--UCGAGC-UC-CG- -5'
28783 5' -49.8 NC_006146.1 + 3780 0.66 0.998624
Target:  5'- cGCgGggGGGgGGggGGGGgg-GGGGCa -3'
miRNA:   3'- -CGgCuuUUCgUCuuUCUCgagCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 81644 0.66 0.998624
Target:  5'- uGCCGGGAcGUu---GGGGCUCGgaGGGUg -3'
miRNA:   3'- -CGGCUUUuCGucuuUCUCGAGC--UCCG- -5'
28783 5' -49.8 NC_006146.1 + 40666 0.66 0.998624
Target:  5'- cCUGGAGacuGGUGGu--GGGCUCuGAGGCg -3'
miRNA:   3'- cGGCUUU---UCGUCuuuCUCGAG-CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 88971 0.66 0.998624
Target:  5'- uGCUGGGAAuguuGUGGcuGGGGCU-GAGGCu -3'
miRNA:   3'- -CGGCUUUU----CGUCuuUCUCGAgCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 49879 0.66 0.99846
Target:  5'- cGUCGGGAGGCugggguccuccgguaGGAGAGGuagucggaggccGC-CGAGGCc -3'
miRNA:   3'- -CGGCUUUUCG---------------UCUUUCU------------CGaGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 52061 0.66 0.99846
Target:  5'- cGuuGAAAcgguAGCAugacGGGAGGGCUgcggucgggggccggCGAGGCc -3'
miRNA:   3'- -CggCUUU----UCGU----CUUUCUCGA---------------GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 104975 0.66 0.998341
Target:  5'- gGCCu-GGGGCucccGAGGGGGCUCuGGGGa -3'
miRNA:   3'- -CGGcuUUUCGu---CUUUCUCGAG-CUCCg -5'
28783 5' -49.8 NC_006146.1 + 101565 0.66 0.998341
Target:  5'- uCCGAGAcGGUGGAGcuGGAGUUggagccaacgaCGAGGCc -3'
miRNA:   3'- cGGCUUU-UCGUCUU--UCUCGA-----------GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 57037 0.66 0.998341
Target:  5'- gGCCGGggcGAAGCcGccAGGGUU-GAGGCg -3'
miRNA:   3'- -CGGCU---UUUCGuCuuUCUCGAgCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 51401 0.66 0.998341
Target:  5'- aGCCGcuuGAGGgGGcuGAGGAGUUgGAGuGCg -3'
miRNA:   3'- -CGGCu--UUUCgUC--UUUCUCGAgCUC-CG- -5'
28783 5' -49.8 NC_006146.1 + 33462 0.66 0.998341
Target:  5'- cCUGAAAGGCaaugggggucGGGAAGGGa--GGGGCg -3'
miRNA:   3'- cGGCUUUUCG----------UCUUUCUCgagCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 137570 0.66 0.998341
Target:  5'- uGCCGGGuccgcuGCccGGuccuGGAGCUCG-GGCc -3'
miRNA:   3'- -CGGCUUuu----CG--UCuu--UCUCGAGCuCCG- -5'
28783 5' -49.8 NC_006146.1 + 44526 0.66 0.998341
Target:  5'- gGUgGGAuccauGGCAGGAuauccuggaaaaGGGGC-CGGGGCu -3'
miRNA:   3'- -CGgCUUu----UCGUCUU------------UCUCGaGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 88134 0.66 0.998341
Target:  5'- uGUCGGAAuggGGCGcaAAGGGGCUucaCGAGGUg -3'
miRNA:   3'- -CGGCUUU---UCGUc-UUUCUCGA---GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 123341 0.66 0.998341
Target:  5'- gGCCGucAGGGGUcucgccGAGGGAGCUCu-GGCg -3'
miRNA:   3'- -CGGC--UUUUCGu-----CUUUCUCGAGcuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.