miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 167161 0.66 0.951314
Target:  5'- cCCACCccgGGCugaagGGCCACGCggcccCCaGAGa -3'
miRNA:   3'- -GGUGGaaaCUGua---CCGGUGCG-----GG-CUC- -5'
28787 3' -55.4 NC_006146.1 + 157968 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 154890 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 151812 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 148734 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 145657 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 142579 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 17700 0.66 0.951314
Target:  5'- gCgGCCcgUGGC--GGCCaaGCGCCUGGGg -3'
miRNA:   3'- -GgUGGaaACUGuaCCGG--UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 62368 0.66 0.951314
Target:  5'- cCCGCUguacgagGACggGGCCucgGCCUGGGg -3'
miRNA:   3'- -GGUGGaaa----CUGuaCCGGug-CGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 70144 0.66 0.951314
Target:  5'- gCCGCCUUcgccUGGCuccUGGCCgggGCGCUgguggccggCGAGg -3'
miRNA:   3'- -GGUGGAA----ACUGu--ACCGG---UGCGG---------GCUC- -5'
28787 3' -55.4 NC_006146.1 + 19888 0.66 0.947143
Target:  5'- gCCAaCUUUGAC-UGGCCcuACGUCCuGGa -3'
miRNA:   3'- -GGUgGAAACUGuACCGG--UGCGGGcUC- -5'
28787 3' -55.4 NC_006146.1 + 115390 0.66 0.947143
Target:  5'- -gACUUUUGAaaauaGGCCACGUCCGc- -3'
miRNA:   3'- ggUGGAAACUgua--CCGGUGCGGGCuc -5'
28787 3' -55.4 NC_006146.1 + 59466 0.66 0.946713
Target:  5'- uCC-CCgaUGAUggaggcaAUGGCCACGgCUGAGu -3'
miRNA:   3'- -GGuGGaaACUG-------UACCGGUGCgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 108411 0.66 0.945847
Target:  5'- aCACCUguccgucUGACGUGGCgGCcagguggacgcaguGCCCGu- -3'
miRNA:   3'- gGUGGAa------ACUGUACCGgUG--------------CGGGCuc -5'
28787 3' -55.4 NC_006146.1 + 56114 0.66 0.942742
Target:  5'- uCCACgaa-GGCgaagGUGGCCGCGggcCCCGAGa -3'
miRNA:   3'- -GGUGgaaaCUG----UACCGGUGC---GGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 58078 0.66 0.93811
Target:  5'- gCACCgg-GACAuUGGCCcCGgCCGGu -3'
miRNA:   3'- gGUGGaaaCUGU-ACCGGuGCgGGCUc -5'
28787 3' -55.4 NC_006146.1 + 67301 0.66 0.93811
Target:  5'- uCCGCCagcucCcgGGCCACGUCCGc- -3'
miRNA:   3'- -GGUGGaaacuGuaCCGGUGCGGGCuc -5'
28787 3' -55.4 NC_006146.1 + 52681 0.66 0.93811
Target:  5'- gCCGCCUcuccGAgAUGGUCGCugccguGUCCGGGg -3'
miRNA:   3'- -GGUGGAaa--CUgUACCGGUG------CGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 122826 0.66 0.936192
Target:  5'- gCCGCCgugagcgaguACGUGGaCCGCacgcuGCCCGGGg -3'
miRNA:   3'- -GGUGGaaac------UGUACC-GGUG-----CGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 24948 0.66 0.933245
Target:  5'- gCC-CCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGuGGAAaCUGuaCCGGUgCGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.