miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 3' -57.5 NC_006146.1 + 168191 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 167259 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 170055 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 169123 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 150925 0.66 0.880603
Target:  5'- -cGUGGGGccuccugaccucgcAGACGCCCcc-GGCCCUg -3'
miRNA:   3'- gaCACCCU--------------UUUGCGGGcacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 70979 0.66 0.875684
Target:  5'- ---cGGGGGuGCGaCCCG-GAGCCCgCUc -3'
miRNA:   3'- gacaCCCUUuUGC-GGGCaCUCGGG-GA- -5'
28792 3' -57.5 NC_006146.1 + 126478 0.66 0.875684
Target:  5'- ---cGGGugccAGAC-CCCGgGAGCCCCUc -3'
miRNA:   3'- gacaCCCu---UUUGcGGGCaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 6437 0.66 0.875684
Target:  5'- aUGUGGGcccuGGgGUCCaugGGGCCCCa -3'
miRNA:   3'- gACACCCuu--UUgCGGGca-CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 159962 0.66 0.875683
Target:  5'- cCUGUGguaGGAGGugGCgCGcagGAGCCCg- -3'
miRNA:   3'- -GACAC---CCUUUugCGgGCa--CUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 117242 0.66 0.868477
Target:  5'- --cUGGGcaAGAGCGUCUGUcgggcgcugacuGAGCCCCg -3'
miRNA:   3'- gacACCC--UUUUGCGGGCA------------CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 40505 0.66 0.845644
Target:  5'- -gGUGGaGAGAUGCUCGgGGGCCCa- -3'
miRNA:   3'- gaCACCcUUUUGCGGGCaCUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 14558 0.66 0.844854
Target:  5'- gCUGcUGGGc---CGCUuucggggCGUGAGCCCCa -3'
miRNA:   3'- -GAC-ACCCuuuuGCGG-------GCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 155052 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 130144 0.67 0.83765
Target:  5'- --uUGGGcAGGuccACGUCCGUGgccAGCCCCa -3'
miRNA:   3'- gacACCC-UUU---UGCGGGCAC---UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 158131 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 145818 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 148896 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 151974 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 142740 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 57362 0.67 0.829473
Target:  5'- gUGaGGGAGgcugcggcgguGGCGCCgGUGggcuGGCCCCg -3'
miRNA:   3'- gACaCCCUU-----------UUGCGGgCAC----UCGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.