Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28792 | 5' | -56.5 | NC_006146.1 | + | 139523 | 0.66 | 0.903395 |
Target: 5'- gGAGGAGgUCuguAUGGGgGCcaagGGGGCu -3' miRNA: 3'- gCUCCUCgAGu--UGCUCgCGca--CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 137183 | 0.66 | 0.903395 |
Target: 5'- gGAGGAGCUCcagAACGGGgGUaGgccGGGCa -3' miRNA: 3'- gCUCCUCGAG---UUGCUCgCG-Cac-CUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 123034 | 0.66 | 0.903395 |
Target: 5'- cCGAGGcGGCcCAGgucCGGGCGC-UGGAGg -3' miRNA: 3'- -GCUCC-UCGaGUU---GCUCGCGcACCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 124605 | 0.66 | 0.897101 |
Target: 5'- aGAGGGGCUCGAgcuCGAcCGCcgccaccGGGGCu -3' miRNA: 3'- gCUCCUCGAGUU---GCUcGCGca-----CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 34569 | 0.66 | 0.896459 |
Target: 5'- gGGGGAgGUUCuGCGccccguuauaccuAGUGgGUGGAGCc -3' miRNA: 3'- gCUCCU-CGAGuUGC-------------UCGCgCACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 153518 | 0.67 | 0.883844 |
Target: 5'- gGAGGcuGUggauggaGugGGGgGCGUGGGGCu -3' miRNA: 3'- gCUCCu-CGag-----UugCUCgCGCACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 56835 | 0.67 | 0.883844 |
Target: 5'- cCGAGGcGGCcucuggCGGCGGGgGCGgcagcuuuggcUGGGGCu -3' miRNA: 3'- -GCUCC-UCGa-----GUUGCUCgCGC-----------ACCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 34154 | 0.67 | 0.883844 |
Target: 5'- --cGGAGCccCGGCGAGgGUGgGGGGUg -3' miRNA: 3'- gcuCCUCGa-GUUGCUCgCGCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 163675 | 0.67 | 0.883844 |
Target: 5'- gGAGGAaguaGUUguGCaGGCGCGUGG-GCc -3' miRNA: 3'- gCUCCU----CGAguUGcUCGCGCACCuCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 42261 | 0.67 | 0.87689 |
Target: 5'- gCGAGGAgcugGCUCAGCuGGGCGacaccggGGAGg -3' miRNA: 3'- -GCUCCU----CGAGUUG-CUCGCgca----CCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 136996 | 0.67 | 0.87689 |
Target: 5'- gGAGGAGCUCcagGACGGGgGUaGgccGGGCa -3' miRNA: 3'- gCUCCUCGAG---UUGCUCgCG-Cac-CUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 167738 | 0.67 | 0.869725 |
Target: 5'- uCGcAGGuGCUCGAUcaGGGCGCa-GGGGCc -3' miRNA: 3'- -GC-UCCuCGAGUUG--CUCGCGcaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 53789 | 0.67 | 0.8668 |
Target: 5'- aCGAGGGcCUCGGCccGCGCGgcguccauagcggGGGGCu -3' miRNA: 3'- -GCUCCUcGAGUUGcuCGCGCa------------CCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 68057 | 0.67 | 0.862352 |
Target: 5'- uGAGcAGCUCcACGAGCgGCGc-GAGCa -3' miRNA: 3'- gCUCcUCGAGuUGCUCG-CGCacCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 167898 | 0.67 | 0.862352 |
Target: 5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3' miRNA: 3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 54899 | 0.67 | 0.862352 |
Target: 5'- gGAGGAGCUCuuuGCuGAGUacCG-GGAGUg -3' miRNA: 3'- gCUCCUCGAGu--UG-CUCGc-GCaCCUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 168830 | 0.67 | 0.862352 |
Target: 5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3' miRNA: 3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 169762 | 0.67 | 0.862352 |
Target: 5'- cCGGGGAcccucGCgggggCAcCG-GCGCGUGGAGa -3' miRNA: 3'- -GCUCCU-----CGa----GUuGCuCGCGCACCUCg -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 19152 | 0.67 | 0.854779 |
Target: 5'- uGAcGGGGC-CAGCGuGUGCGUGaacguguuuGGGCa -3' miRNA: 3'- gCU-CCUCGaGUUGCuCGCGCAC---------CUCG- -5' |
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28792 | 5' | -56.5 | NC_006146.1 | + | 145017 | 0.67 | 0.854779 |
Target: 5'- gGAGGAGCUCuccAccacaauguuccCGGGCaGCGUG-AGCg -3' miRNA: 3'- gCUCCUCGAGu--U------------GCUCG-CGCACcUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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