miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 5' -56.5 NC_006146.1 + 154601 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 153595 0.69 0.796679
Target:  5'- uGAcGGAgGC-CAACGAGCGCGgGGucagaGGCa -3'
miRNA:   3'- gCU-CCU-CGaGUUGCUCGCGCaCC-----UCG- -5'
28792 5' -56.5 NC_006146.1 + 153518 0.67 0.883844
Target:  5'- gGAGGcuGUggauggaGugGGGgGCGUGGGGCu -3'
miRNA:   3'- gCUCCu-CGag-----UugCUCgCGCACCUCG- -5'
28792 5' -56.5 NC_006146.1 + 151523 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 148445 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 148297 0.71 0.652305
Target:  5'- -cAGGAGCUcCAGCagGAGCGCG-GaGAGCc -3'
miRNA:   3'- gcUCCUCGA-GUUG--CUCGCGCaC-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 146164 0.69 0.769464
Target:  5'- gGAGGcuGCUUcugaauGACGAGCGCcUGGAcGCu -3'
miRNA:   3'- gCUCCu-CGAG------UUGCUCGCGcACCU-CG- -5'
28792 5' -56.5 NC_006146.1 + 145367 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 145017 0.67 0.854779
Target:  5'- gGAGGAGCUCuccAccacaauguuccCGGGCaGCGUG-AGCg -3'
miRNA:   3'- gCUCCUCGAGu--U------------GCUCG-CGCACcUCG- -5'
28792 5' -56.5 NC_006146.1 + 142289 0.66 0.924702
Target:  5'- aGAGGGGCagagccagcCAGCGgcugaacccgaggaGGCGCccGGAGCg -3'
miRNA:   3'- gCUCCUCGa--------GUUGC--------------UCGCGcaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 139523 0.66 0.903395
Target:  5'- gGAGGAGgUCuguAUGGGgGCcaagGGGGCu -3'
miRNA:   3'- gCUCCUCgAGu--UGCUCgCGca--CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 137845 0.72 0.642241
Target:  5'- aGGGGGGCUCG--GGGUGgGUGG-GCg -3'
miRNA:   3'- gCUCCUCGAGUugCUCGCgCACCuCG- -5'
28792 5' -56.5 NC_006146.1 + 137183 0.66 0.903395
Target:  5'- gGAGGAGCUCcagAACGGGgGUaGgccGGGCa -3'
miRNA:   3'- gCUCCUCGAG---UUGCUCgCG-Cac-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 136996 0.67 0.87689
Target:  5'- gGAGGAGCUCcagGACGGGgGUaGgccGGGCa -3'
miRNA:   3'- gCUCCUCGAG---UUGCUCgCG-Cac-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 130722 0.66 0.920913
Target:  5'- cCGAGGAGgaCGAgGAG-GCG-GcGGGCu -3'
miRNA:   3'- -GCUCCUCgaGUUgCUCgCGCaC-CUCG- -5'
28792 5' -56.5 NC_006146.1 + 129325 0.71 0.682371
Target:  5'- ---uGAGCUCGuccucGCGcAGCGCGcGGAGCg -3'
miRNA:   3'- gcucCUCGAGU-----UGC-UCGCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 128199 0.66 0.925764
Target:  5'- aGGGGGGCgccgCGgcgccgggccagACGcucuuucGGCGCGgGGAGCu -3'
miRNA:   3'- gCUCCUCGa---GU------------UGC-------UCGCGCaCCUCG- -5'
28792 5' -56.5 NC_006146.1 + 127723 0.7 0.731561
Target:  5'- gCGAGGAGCUgAugGGGCugggccggagaGCcUGGAGa -3'
miRNA:   3'- -GCUCCUCGAgUugCUCG-----------CGcACCUCg -5'
28792 5' -56.5 NC_006146.1 + 127490 0.66 0.926291
Target:  5'- aCGAGGAGa-CGGCGGGgGuCGcagccGGGGCa -3'
miRNA:   3'- -GCUCCUCgaGUUGCUCgC-GCa----CCUCG- -5'
28792 5' -56.5 NC_006146.1 + 124605 0.66 0.897101
Target:  5'- aGAGGGGCUCGAgcuCGAcCGCcgccaccGGGGCu -3'
miRNA:   3'- gCUCCUCGAGUU---GCUcGCGca-----CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.