miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 3' -56.4 NC_006146.1 + 156579 0.65 0.925636
Target:  5'- gGCCCUgcgugaguucuccaGCAGGU-GCGCCAGcuccAGGgacaGGg -3'
miRNA:   3'- gCGGGA--------------CGUCCAgCGCGGUU----UUCa---CC- -5'
28795 3' -56.4 NC_006146.1 + 16700 0.66 0.921862
Target:  5'- aGCCagacGCAGGUCcacgaCGCCccGGGGUGGa -3'
miRNA:   3'- gCGGga--CGUCCAGc----GCGGu-UUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 159957 0.66 0.921862
Target:  5'- aCGuCCCUGUgguaggAGGUgGCGCgCAGGAGcccgcaguUGGg -3'
miRNA:   3'- -GC-GGGACG------UCCAgCGCG-GUUUUC--------ACC- -5'
28795 3' -56.4 NC_006146.1 + 23471 0.66 0.921862
Target:  5'- gGCCCUGgccguggcCAGGUaCGgGCU---GGUGGg -3'
miRNA:   3'- gCGGGAC--------GUCCA-GCgCGGuuuUCACC- -5'
28795 3' -56.4 NC_006146.1 + 71754 0.66 0.916272
Target:  5'- cCGCcaCCUGCcGGUCGCuggaGCCccu-GUGGa -3'
miRNA:   3'- -GCG--GGACGuCCAGCG----CGGuuuuCACC- -5'
28795 3' -56.4 NC_006146.1 + 69855 0.66 0.916272
Target:  5'- gGCCCUgGgAGGUCGgGCguAGAGg-- -3'
miRNA:   3'- gCGGGA-CgUCCAGCgCGguUUUCacc -5'
28795 3' -56.4 NC_006146.1 + 39059 0.66 0.916272
Target:  5'- gGCCCUGUgaauGGUCGCcgGCCuccGGUcuGGg -3'
miRNA:   3'- gCGGGACGu---CCAGCG--CGGuuuUCA--CC- -5'
28795 3' -56.4 NC_006146.1 + 84524 0.66 0.910451
Target:  5'- aCGUCgUGCcGGUacagGCGCCGuggcAGGUGGu -3'
miRNA:   3'- -GCGGgACGuCCAg---CGCGGUu---UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 61781 0.66 0.910451
Target:  5'- uGCCCaagacgGCAGccUCGUuaCAGAAGUGGg -3'
miRNA:   3'- gCGGGa-----CGUCc-AGCGcgGUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 169174 0.66 0.910451
Target:  5'- gGCgCCUGCAGGggGgGCCGGcGG-GGc -3'
miRNA:   3'- gCG-GGACGUCCagCgCGGUUuUCaCC- -5'
28795 3' -56.4 NC_006146.1 + 167310 0.66 0.910451
Target:  5'- gGCgCCUGCAGGggGgGCCGGcGG-GGc -3'
miRNA:   3'- gCG-GGACGUCCagCgCGGUUuUCaCC- -5'
28795 3' -56.4 NC_006146.1 + 168242 0.66 0.910451
Target:  5'- gGCgCCUGCAGGggGgGCCGGcGG-GGc -3'
miRNA:   3'- gCG-GGACGUCCagCgCGGUUuUCaCC- -5'
28795 3' -56.4 NC_006146.1 + 128920 0.66 0.904399
Target:  5'- aGCUgUGCGGGUCGagGCCGGGAa--- -3'
miRNA:   3'- gCGGgACGUCCAGCg-CGGUUUUcacc -5'
28795 3' -56.4 NC_006146.1 + 167635 0.66 0.904399
Target:  5'- gGUCCcGCGGGgcccggcgCGUGCCGGGGGcccgGGg -3'
miRNA:   3'- gCGGGaCGUCCa-------GCGCGGUUUUCa---CC- -5'
28795 3' -56.4 NC_006146.1 + 52469 0.66 0.898118
Target:  5'- cCGCCgUGCAGGaccUCG-GCCAGGGacUGGa -3'
miRNA:   3'- -GCGGgACGUCC---AGCgCGGUUUUc-ACC- -5'
28795 3' -56.4 NC_006146.1 + 52430 0.67 0.891612
Target:  5'- gGCCuCUGCccuccaguuugGGGUCGaCGCCcugGAGAG-GGg -3'
miRNA:   3'- gCGG-GACG-----------UCCAGC-GCGG---UUUUCaCC- -5'
28795 3' -56.4 NC_006146.1 + 149939 0.67 0.890949
Target:  5'- uGCCCUcgGGGUUgaggggcgcccagGCGUUggGAGUGGg -3'
miRNA:   3'- gCGGGAcgUCCAG-------------CGCGGuuUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 166541 0.67 0.887602
Target:  5'- gGUCCUugGCAGGUUgguaggggucuucagGCaGCCGAAAGUGu -3'
miRNA:   3'- gCGGGA--CGUCCAG---------------CG-CGGUUUUCACc -5'
28795 3' -56.4 NC_006146.1 + 128642 0.67 0.884884
Target:  5'- uCGCCCaGCuGaGccagcuccUCGCGCCGGAGG-GGg -3'
miRNA:   3'- -GCGGGaCGuC-C--------AGCGCGGUUUUCaCC- -5'
28795 3' -56.4 NC_006146.1 + 42318 0.67 0.884884
Target:  5'- uGCCCUGCgAGGUUGCugacugGCCcgGGAGGUc- -3'
miRNA:   3'- gCGGGACG-UCCAGCG------CGG--UUUUCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.