miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 54629 0.66 0.924652
Target:  5'- cGCCUCuCUggucCGGUggcuccccGGGcauUGGAGGGGCc -3'
miRNA:   3'- cCGGAG-GAa---GUCG--------UCCu--ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 89754 0.66 0.924652
Target:  5'- cGGgCUCCggCAGUggcggaaaucgAGGAc-GAGGGGCc -3'
miRNA:   3'- -CCgGAGGaaGUCG-----------UCCUacUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 50262 0.66 0.924652
Target:  5'- cGGaCUcucgUCCUUCGuCGGGGccAAGGGGCg -3'
miRNA:   3'- -CC-GG----AGGAAGUcGUCCUacUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 163006 0.66 0.924652
Target:  5'- cGGCCUCCUcuuUgGGCcuuuuGGAcauucuucUGAGGGaacGGCg -3'
miRNA:   3'- -CCGGAGGA---AgUCGu----CCU--------ACUUCC---CCG- -5'
28795 5' -56.1 NC_006146.1 + 52970 0.66 0.924652
Target:  5'- uGGcCCUCC----GCGGGgcGggGcGGGCg -3'
miRNA:   3'- -CC-GGAGGaaguCGUCCuaCuuC-CCCG- -5'
28795 5' -56.1 NC_006146.1 + 53808 0.66 0.924652
Target:  5'- cGGCgUCCa-UAGCGGGGggcugGAAGagucGGGCg -3'
miRNA:   3'- -CCGgAGGaaGUCGUCCUa----CUUC----CCCG- -5'
28795 5' -56.1 NC_006146.1 + 126447 0.66 0.919147
Target:  5'- aGCCUCC--CGGCGGcGAgaAAGGcGGCa -3'
miRNA:   3'- cCGGAGGaaGUCGUC-CUacUUCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 43180 0.66 0.918584
Target:  5'- gGGCCcagccccaucagcUCCUcgCGGgAGGcgGGgauGGGGCg -3'
miRNA:   3'- -CCGG-------------AGGAa-GUCgUCCuaCUu--CCCCG- -5'
28795 5' -56.1 NC_006146.1 + 88725 0.66 0.907431
Target:  5'- cGGCUcCCUguaauccaGGUauggAGGAUGcAGGGGCu -3'
miRNA:   3'- -CCGGaGGAag------UCG----UCCUACuUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 64227 0.66 0.907431
Target:  5'- aGGCacaUCUgcgccUgGGCcgGGGcgGGAGGGGCg -3'
miRNA:   3'- -CCGg--AGGa----AgUCG--UCCuaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 122957 0.66 0.907431
Target:  5'- aGCCugUCCacgCAGCGGGA-GgcGGGGa -3'
miRNA:   3'- cCGG--AGGaa-GUCGUCCUaCuuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 42362 0.66 0.907431
Target:  5'- aGGaUCUCCcgCGccGcCAGGGUGGgcgAGGGGCg -3'
miRNA:   3'- -CC-GGAGGaaGU--C-GUCCUACU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 121205 0.66 0.907431
Target:  5'- uGGCC-CCUggAG-AGGGUGGAGGaGGa -3'
miRNA:   3'- -CCGGaGGAagUCgUCCUACUUCC-CCg -5'
28795 5' -56.1 NC_006146.1 + 44340 0.66 0.907431
Target:  5'- gGGCUUCUgcaCAGguGGcUGAuGGGGa -3'
miRNA:   3'- -CCGGAGGaa-GUCguCCuACUuCCCCg -5'
28795 5' -56.1 NC_006146.1 + 102561 0.66 0.901223
Target:  5'- aGGCgUCCagCAGCAGGuccgagccgagcGUGcaggucGGGGGGUc -3'
miRNA:   3'- -CCGgAGGaaGUCGUCC------------UAC------UUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 139093 0.66 0.901223
Target:  5'- gGGCCUcgCCUggAGUuggguugcguGGGGUGucaauuGGGGGCu -3'
miRNA:   3'- -CCGGA--GGAagUCG----------UCCUACu-----UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 43336 0.66 0.901223
Target:  5'- cGGCCgCCcagggcCAGCAGGcgcagcccGUGGcaGGGGGUg -3'
miRNA:   3'- -CCGGaGGaa----GUCGUCC--------UACU--UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 54330 0.66 0.901223
Target:  5'- uGGCC-CCUaCGu--GGAUGA-GGGGCa -3'
miRNA:   3'- -CCGGaGGAaGUcguCCUACUuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 11134 0.66 0.901223
Target:  5'- cGGCCUaCCUgggGGCGGuGGUGGucacGGaGGCa -3'
miRNA:   3'- -CCGGA-GGAag-UCGUC-CUACUu---CC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 50713 0.66 0.901223
Target:  5'- aGGCCUgaaagccggCgUUgAGCGGGGgcGAcGGGGCg -3'
miRNA:   3'- -CCGGA---------GgAAgUCGUCCUa-CUuCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.