miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28800 5' -50.2 NC_006146.1 + 98771 0.66 0.997741
Target:  5'- aCGCCuuucaggaaUGC-CUAGAG-AGUAGACAc -3'
miRNA:   3'- gGCGGug-------ACGcGAUUUCaUCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 71753 0.66 0.997314
Target:  5'- uCCGCCAcCUGCcggucGCUGGAGccccuGUGGAg- -3'
miRNA:   3'- -GGCGGU-GACG-----CGAUUUCau---CAUCUgu -5'
28800 5' -50.2 NC_006146.1 + 149116 0.66 0.997314
Target:  5'- cCCGgcaucCCGCUGgGCuUAGAaUGGUGGGCGg -3'
miRNA:   3'- -GGC-----GGUGACgCG-AUUUcAUCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 56460 0.66 0.996822
Target:  5'- aCGCCACcauuaaGCUAGAGUccaaugacGUGGACAu -3'
miRNA:   3'- gGCGGUGacg---CGAUUUCAu-------CAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 55366 0.66 0.996822
Target:  5'- cCCGCCACcGCGCgcGGGacgcccgGGGCAc -3'
miRNA:   3'- -GGCGGUGaCGCGauUUCauca---UCUGU- -5'
28800 5' -50.2 NC_006146.1 + 4661 0.66 0.996822
Target:  5'- cCCGCCGucCUGgGCc-GGGUGGgcgAGGCGg -3'
miRNA:   3'- -GGCGGU--GACgCGauUUCAUCa--UCUGU- -5'
28800 5' -50.2 NC_006146.1 + 56323 0.66 0.996661
Target:  5'- gCCGUaGCUGCGCcgcgagaagGAggccgcccggagcaGGUAGUAGGCGu -3'
miRNA:   3'- -GGCGgUGACGCGa--------UU--------------UCAUCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 40384 0.66 0.996259
Target:  5'- gUCGCCGCccgGCGCgu-AGUAGccucccgcggGGGCAa -3'
miRNA:   3'- -GGCGGUGa--CGCGauuUCAUCa---------UCUGU- -5'
28800 5' -50.2 NC_006146.1 + 76373 0.66 0.995616
Target:  5'- aCCGCCACgagaggGCGCgccgGGGGaGGgaccggGGGCGc -3'
miRNA:   3'- -GGCGGUGa-----CGCGa---UUUCaUCa-----UCUGU- -5'
28800 5' -50.2 NC_006146.1 + 71840 0.67 0.995188
Target:  5'- gCCGgagaCCACUGUGggGgugaggugucguuagGGGUGGUGGACAc -3'
miRNA:   3'- -GGC----GGUGACGCgaU---------------UUCAUCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 125990 0.67 0.994885
Target:  5'- cUCGCgGCUGCGaggcuugGGAGUGG-GGGCGg -3'
miRNA:   3'- -GGCGgUGACGCga-----UUUCAUCaUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 25387 0.67 0.993128
Target:  5'- uCCGCCGCggcaaGgGCUAcgucaGAGUcuccGUGGACAc -3'
miRNA:   3'- -GGCGGUGa----CgCGAU-----UUCAu---CAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 113294 0.67 0.992085
Target:  5'- aCCGUCugUaGCGCUGAA--AGUucccAGACAg -3'
miRNA:   3'- -GGCGGugA-CGCGAUUUcaUCA----UCUGU- -5'
28800 5' -50.2 NC_006146.1 + 120481 0.67 0.992085
Target:  5'- aCGUCGCUGCGCUGcuuccugcccGUGG-AGGCu -3'
miRNA:   3'- gGCGGUGACGCGAUuu--------CAUCaUCUGu -5'
28800 5' -50.2 NC_006146.1 + 71163 0.68 0.989623
Target:  5'- aCCGgCACUGUGgCUuGGGUGGUGGu-- -3'
miRNA:   3'- -GGCgGUGACGC-GAuUUCAUCAUCugu -5'
28800 5' -50.2 NC_006146.1 + 42635 0.68 0.988186
Target:  5'- gCCGCCGCcgUGgGCcucacGUAGUGGGCc -3'
miRNA:   3'- -GGCGGUG--ACgCGauuu-CAUCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 11364 0.68 0.988186
Target:  5'- gCGCaggCGCUGCGCgucAGgcaGGUGGGCAa -3'
miRNA:   3'- gGCG---GUGACGCGauuUCa--UCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 155808 0.68 0.986599
Target:  5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3'
miRNA:   3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 152730 0.68 0.986599
Target:  5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3'
miRNA:   3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 149653 0.68 0.986599
Target:  5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3'
miRNA:   3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.