miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 116666 0.66 0.768291
Target:  5'- cGGGGcCGCCcAGaGGCUCUgcucccGCCCCa -3'
miRNA:   3'- -UCUC-GCGGaUC-CCGAGGuucu--CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 150919 0.66 0.768291
Target:  5'- -cGGCGUCgUGGGGcCUCCugaccucgcAGAcGCCCCc -3'
miRNA:   3'- ucUCGCGG-AUCCC-GAGGu--------UCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 49151 0.66 0.768291
Target:  5'- -aGGCGCac-GGGUUCCAGGgucAGCCUg -3'
miRNA:   3'- ucUCGCGgauCCCGAGGUUC---UCGGGg -5'
28803 3' -60.1 NC_006146.1 + 55380 0.66 0.768291
Target:  5'- cGGGaCGCCcGGGGCaCCGAG-GCCa- -3'
miRNA:   3'- uCUC-GCGGaUCCCGaGGUUCuCGGgg -5'
28803 3' -60.1 NC_006146.1 + 45529 0.66 0.768291
Target:  5'- uGGGgGCCUGGGcCUCCuuGGGCUuggCCg -3'
miRNA:   3'- uCUCgCGGAUCCcGAGGuuCUCGG---GG- -5'
28803 3' -60.1 NC_006146.1 + 149953 0.66 0.767373
Target:  5'- aGGGGCGCCcaggcguugggagUGGGGg-CCAGG-GCCUg -3'
miRNA:   3'- -UCUCGCGG-------------AUCCCgaGGUUCuCGGGg -5'
28803 3' -60.1 NC_006146.1 + 30278 0.66 0.762766
Target:  5'- aGGAGCGCCgugguccccuccuGGGCUUCGcuGGuGCUgCCa -3'
miRNA:   3'- -UCUCGCGGau-----------CCCGAGGU--UCuCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 57381 0.66 0.759061
Target:  5'- -uGGCGCCgguGGGCU-----GGCCCCg -3'
miRNA:   3'- ucUCGCGGau-CCCGAgguucUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 81976 0.66 0.759061
Target:  5'- gGGAGCcucaGCCUca-GC-CaCAAGAGCCCCa -3'
miRNA:   3'- -UCUCG----CGGAuccCGaG-GUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 76952 0.66 0.759061
Target:  5'- uGGAGguCGCCUGGGaCggagagcGGAGCCCCg -3'
miRNA:   3'- -UCUC--GCGGAUCCcGaggu---UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 9791 0.66 0.759061
Target:  5'- uGAGCGUCU---GCUCCucuccAGGGCCCa -3'
miRNA:   3'- uCUCGCGGAuccCGAGGu----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 90975 0.66 0.759061
Target:  5'- uGGGUcagGUC-AGGGUUUCGGGAaGCCCCc -3'
miRNA:   3'- uCUCG---CGGaUCCCGAGGUUCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 111365 0.66 0.749725
Target:  5'- cAGGGCGacaaaCUGGGaaUUgAAGAGCCCg -3'
miRNA:   3'- -UCUCGCg----GAUCCcgAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 124749 0.66 0.749725
Target:  5'- cGAGUuCCUGGGGCuggUCCAcaaucAGAGCacggccagggCCCg -3'
miRNA:   3'- uCUCGcGGAUCCCG---AGGU-----UCUCG----------GGG- -5'
28803 3' -60.1 NC_006146.1 + 170105 0.66 0.749725
Target:  5'- -cGGCGCCgcagGGGGggCCGgcGGGGCguCCCg -3'
miRNA:   3'- ucUCGCGGa---UCCCgaGGU--UCUCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 17952 0.66 0.749725
Target:  5'- -uAGC-CCUccAGGcCUCCGAG-GCCCCa -3'
miRNA:   3'- ucUCGcGGA--UCCcGAGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 85907 0.66 0.749725
Target:  5'- gAGAGaGCCgcGGGGCUUUAcccuGGGGCCUg -3'
miRNA:   3'- -UCUCgCGGa-UCCCGAGGU----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 126181 0.66 0.749725
Target:  5'- aGGGGgGCCaguGGGCaggcaCCugauAGAGUCCCu -3'
miRNA:   3'- -UCUCgCGGau-CCCGa----GGu---UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 118636 0.66 0.740291
Target:  5'- gGGGGCGCCcGGGGC-CCAGuacacGuGCgUCCa -3'
miRNA:   3'- -UCUCGCGGaUCCCGaGGUU-----CuCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 62383 0.66 0.740291
Target:  5'- cGGGGCcucgGCCUGGGGUaagguuaucgacUCCG-GAaCCCCg -3'
miRNA:   3'- -UCUCG----CGGAUCCCG------------AGGUuCUcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.