miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 157532 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 157295 0.71 0.453878
Target:  5'- uGGGCGUCUcugggucuggacuggAGGGCcCUggGAgGCCCCu -3'
miRNA:   3'- uCUCGCGGA---------------UCCCGaGGuuCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 156714 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 156252 0.7 0.524373
Target:  5'- cGGGGUGCCgugguuGGGCagcaCCAuGAGCUCCc -3'
miRNA:   3'- -UCUCGCGGau----CCCGa---GGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 156008 0.74 0.294034
Target:  5'- cAGAGUuagaaguuagGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG----------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 155969 0.69 0.543639
Target:  5'- cAGAGUuCCagUAGagcaGCUCCGAGAGCUCCg -3'
miRNA:   3'- -UCUCGcGG--AUCc---CGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 155788 0.66 0.730768
Target:  5'- aAGAGcCGCUcGGuGGCcCUggGGGCCaCCg -3'
miRNA:   3'- -UCUC-GCGGaUC-CCGaGGuuCUCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 155751 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 155575 0.72 0.415487
Target:  5'- cGGGGCGCCcgccaGGGGCacaCCGGGgcuggccuccGGCCCCu -3'
miRNA:   3'- -UCUCGCGGa----UCCCGa--GGUUC----------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 155477 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 155352 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 155066 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 154765 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 154530 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 154454 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 154217 0.71 0.453878
Target:  5'- uGGGCGUCUcugggucuggacuggAGGGCcCUggGAgGCCCCu -3'
miRNA:   3'- uCUCGCGGA---------------UCCCGaGGuuCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 153637 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 152930 0.74 0.294034
Target:  5'- cAGAGUuagaaguuagGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG----------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 152399 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 152274 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.