miRNA display CGI


Results 41 - 60 of 325 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 51899 0.71 0.477449
Target:  5'- gAGGcuGCGUCggcgGGGGcCUCCGAGgcaccgacgggcGGCCCCg -3'
miRNA:   3'- -UCU--CGCGGa---UCCC-GAGGUUC------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44411 0.73 0.35029
Target:  5'- -cGGCGCCUuccucgaGGGGCUCCcGGGGUCUg -3'
miRNA:   3'- ucUCGCGGA-------UCCCGAGGuUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 52846 0.77 0.193018
Target:  5'- cGAGcCGCCgccgcccccgcccgGGGGCUCCAGGuccgugguccucgcGGCCCCg -3'
miRNA:   3'- uCUC-GCGGa-------------UCCCGAGGUUC--------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 54613 0.71 0.471955
Target:  5'- gGGGGCGCCauccggccgccucucUGGuccgguGGCUCCccgggcauuggAGGGGCCCCg -3'
miRNA:   3'- -UCUCGCGG---------------AUC------CCGAGG-----------UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 147104 0.78 0.174628
Target:  5'- uGGGCGagCUGGGGCUCagcGGGCCCCa -3'
miRNA:   3'- uCUCGCg-GAUCCCGAGguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 70211 0.69 0.572949
Target:  5'- -cAGCGCC--GGGUgCCGAGGGCCgCg -3'
miRNA:   3'- ucUCGCGGauCCCGaGGUUCUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 13367 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 21689 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 12454 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167689 0.69 0.563131
Target:  5'- aGGGGCGagcggGGGGCUUCcccGGGGCCCg -3'
miRNA:   3'- -UCUCGCgga--UCCCGAGGu--UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 41848 0.7 0.533975
Target:  5'- cGGGCcgugGCCaGGGGCUaCCGGG-GCCUCg -3'
miRNA:   3'- uCUCG----CGGaUCCCGA-GGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 33306 0.7 0.50443
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGGuccggguGCUCCg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCU-------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 54028 0.7 0.483898
Target:  5'- -uGGCGCCUccggAGGGCggCCAugucggcgguggucAGGGCCCa -3'
miRNA:   3'- ucUCGCGGA----UCCCGa-GGU--------------UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 99914 0.71 0.459262
Target:  5'- cGGGCGCaagagcGGGCUCCGGGucGCaCCCc -3'
miRNA:   3'- uCUCGCGgau---CCCGAGGUUCu-CG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 33428 0.71 0.432693
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGuGCaCCUg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCuCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 2047 0.72 0.407042
Target:  5'- -cAGCGCCaagagAGGGC-CCGAGAGUuggCCCu -3'
miRNA:   3'- ucUCGCGGa----UCCCGaGGUUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 168300 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 61482 0.75 0.280958
Target:  5'- cGAGUGgcaggaucaCC-AGGGCUCCGAGgaGGCCCCu -3'
miRNA:   3'- uCUCGC---------GGaUCCCGAGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41041 0.76 0.244502
Target:  5'- aGGAGgGCCUAGGacaGCuUCCGAGGGCUCg -3'
miRNA:   3'- -UCUCgCGGAUCC---CG-AGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 22601 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.