miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 64192 0.66 0.975124
Target:  5'- gCAGGAGUUgCAaggugucgcGGAGCUCCGgcaGGAgGCa -3'
miRNA:   3'- -GUUCUCGAgGU---------UCUCGAGGU---UCU-CGa -5'
28803 5' -53 NC_006146.1 + 51911 0.66 0.975124
Target:  5'- gCGGGGGcCUCCGAG-GCaCCGAcGGGCg -3'
miRNA:   3'- -GUUCUC-GAGGUUCuCGaGGUU-CUCGa -5'
28803 5' -53 NC_006146.1 + 136739 0.66 0.972382
Target:  5'- uGGGGGCgcaccccCCAcccucgccGGGGCUCCGGGAGg- -3'
miRNA:   3'- gUUCUCGa------GGU--------UCUCGAGGUUCUCga -5'
28803 5' -53 NC_006146.1 + 143040 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 146118 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 149196 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 152274 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 155352 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 158431 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 162612 0.66 0.972382
Target:  5'- aGAGAGCgaccCCGggaguGGGGCUCCcAGAGa- -3'
miRNA:   3'- gUUCUCGa---GGU-----UCUCGAGGuUCUCga -5'
28803 5' -53 NC_006146.1 + 68057 0.66 0.969429
Target:  5'- uGAGcAGCUCCAcGAGCggCGcGAGCa -3'
miRNA:   3'- gUUC-UCGAGGUuCUCGagGUuCUCGa -5'
28803 5' -53 NC_006146.1 + 104979 0.66 0.969429
Target:  5'- -uGGGGCUCCcgaGGGGGCUCUggGGa-- -3'
miRNA:   3'- guUCUCGAGG---UUCUCGAGGuuCUcga -5'
28803 5' -53 NC_006146.1 + 81655 0.66 0.969429
Target:  5'- -uGGGGCUCgGAGGGUgCCGGGgaAGCg -3'
miRNA:   3'- guUCUCGAGgUUCUCGaGGUUC--UCGa -5'
28803 5' -53 NC_006146.1 + 59788 0.66 0.969429
Target:  5'- uGAGGGUgucgacCCGgcAGAGCUCCAgcugauugAGGGCg -3'
miRNA:   3'- gUUCUCGa-----GGU--UCUCGAGGU--------UCUCGa -5'
28803 5' -53 NC_006146.1 + 167805 0.66 0.969429
Target:  5'- -uAGAGg-CCGgagaAGAGCUCCA-GAGCg -3'
miRNA:   3'- guUCUCgaGGU----UCUCGAGGUuCUCGa -5'
28803 5' -53 NC_006146.1 + 150684 0.66 0.966257
Target:  5'- gGGGAGUggCCAGGGGgaCgGAGGGCc -3'
miRNA:   3'- gUUCUCGa-GGUUCUCgaGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 124749 0.66 0.966257
Target:  5'- --cGAGUUCCuGGGGCuggUCCAcaaucAGAGCa -3'
miRNA:   3'- guuCUCGAGGuUCUCG---AGGU-----UCUCGa -5'
28803 5' -53 NC_006146.1 + 116984 0.66 0.966257
Target:  5'- gAGGAGCUCaacGAGCgCguGGAGCg -3'
miRNA:   3'- gUUCUCGAGguuCUCGaGguUCUCGa -5'
28803 5' -53 NC_006146.1 + 73204 0.66 0.966257
Target:  5'- gAGGGGCUCCugGcGUUCUcgaucaucGAGAGCa -3'
miRNA:   3'- gUUCUCGAGGuuCuCGAGG--------UUCUCGa -5'
28803 5' -53 NC_006146.1 + 61925 0.66 0.966257
Target:  5'- --cGGGCcaUCAGGGGCUCCAGG-GCc -3'
miRNA:   3'- guuCUCGa-GGUUCUCGAGGUUCuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.