miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 5' -53.4 NC_006146.1 + 39671 0.66 0.978466
Target:  5'- uCCAGGCucuGGgGGCGuuGAGA-CAGUa -3'
miRNA:   3'- -GGUCCGcuuCCgCCGU--UUCUaGUCAc -5'
28810 5' -53.4 NC_006146.1 + 155935 0.66 0.976047
Target:  5'- --uGGCGGAGcCGGCGAuGA-CGGUGg -3'
miRNA:   3'- gguCCGCUUCcGCCGUUuCUaGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 150328 0.66 0.976047
Target:  5'- cCCGGGCGcAGGCcGGCua--GUCuGUGc -3'
miRNA:   3'- -GGUCCGCuUCCG-CCGuuucUAGuCAC- -5'
28810 5' -53.4 NC_006146.1 + 16137 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 28449 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 25371 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 22293 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 19215 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 13059 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 126989 0.66 0.976047
Target:  5'- gCCGGGCGAc-GCGGUcccGGAGcUCAuGUGg -3'
miRNA:   3'- -GGUCCGCUucCGCCG---UUUCuAGU-CAC- -5'
28810 5' -53.4 NC_006146.1 + 152857 0.66 0.976047
Target:  5'- --uGGCGGAGcCGGCGAuGA-CGGUGg -3'
miRNA:   3'- gguCCGCUUCcGCCGUUuCUaGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 149779 0.66 0.976047
Target:  5'- --uGGCGGAGcCGGCGAuGA-CGGUGg -3'
miRNA:   3'- gguCCGCUUCcGCCGUUuCUaGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 143624 0.66 0.976047
Target:  5'- --uGGCGGAGcCGGCGAuGA-CGGUGg -3'
miRNA:   3'- gguCCGCUUCcGCCGUUuCUaGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 59538 0.66 0.975794
Target:  5'- uCCAGGUGggGGUgcagcguGGCGauggagGAGAUgAGg- -3'
miRNA:   3'- -GGUCCGCuuCCG-------CCGU------UUCUAgUCac -5'
28810 5' -53.4 NC_006146.1 + 140121 0.66 0.973434
Target:  5'- --nGGaagaGggGGUGGCGGAGGU-GGUGg -3'
miRNA:   3'- gguCCg---CuuCCGCCGUUUCUAgUCAC- -5'
28810 5' -53.4 NC_006146.1 + 59577 0.66 0.973434
Target:  5'- gCCAcGGCGcAGGUGGCGAucuGGAgggCGGc- -3'
miRNA:   3'- -GGU-CCGCuUCCGCCGUU---UCUa--GUCac -5'
28810 5' -53.4 NC_006146.1 + 53339 0.66 0.973434
Target:  5'- gCCcGGCGGccgcgGGGCGGCGuGAGGUCu--- -3'
miRNA:   3'- -GGuCCGCU-----UCCGCCGU-UUCUAGucac -5'
28810 5' -53.4 NC_006146.1 + 70536 0.66 0.970621
Target:  5'- cCCAGGUcgGAGGGCGGUGGugggguauauGGGUU-GUGg -3'
miRNA:   3'- -GGUCCG--CUUCCGCCGUU----------UCUAGuCAC- -5'
28810 5' -53.4 NC_006146.1 + 132970 0.66 0.970621
Target:  5'- uCUGGGUccucgGggGGCGGUGGAGAccgcgggugCGGUGa -3'
miRNA:   3'- -GGUCCG-----CuuCCGCCGUUUCUa--------GUCAC- -5'
28810 5' -53.4 NC_006146.1 + 126452 0.66 0.969737
Target:  5'- cCCGgcGGCGAgaaAGGCGGCAGGuaagcgcgcgcaccuUCGGUGu -3'
miRNA:   3'- -GGU--CCGCU---UCCGCCGUUUcu-------------AGUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.