miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 115406 0.66 0.745275
Target:  5'- uGCaGGAGGCAgCuGGCGGCCgGg-- -3'
miRNA:   3'- gCGgUCUCUGUgGuCCGCCGGgCacc -5'
28811 5' -61.5 NC_006146.1 + 137973 0.66 0.745275
Target:  5'- gGCCGGGccuC-CCGGG-GGCCCGgcgGGg -3'
miRNA:   3'- gCGGUCUcu-GuGGUCCgCCGGGCa--CC- -5'
28811 5' -61.5 NC_006146.1 + 54010 0.66 0.745275
Target:  5'- -cUCAGGGccgGCACCAGGUGGCgccuCCGgagGGc -3'
miRNA:   3'- gcGGUCUC---UGUGGUCCGCCG----GGCa--CC- -5'
28811 5' -61.5 NC_006146.1 + 46985 0.66 0.745275
Target:  5'- cCGCCAGGaAUugcgcccgucggACCGGcaGCGGCCCGgucGGa -3'
miRNA:   3'- -GCGGUCUcUG------------UGGUC--CGCCGGGCa--CC- -5'
28811 5' -61.5 NC_006146.1 + 78450 0.66 0.745275
Target:  5'- cCGCCAauucAGACcCCAGGCGGgCCa--- -3'
miRNA:   3'- -GCGGUc---UCUGuGGUCCGCCgGGcacc -5'
28811 5' -61.5 NC_006146.1 + 65619 0.66 0.745275
Target:  5'- gCGUCAGAGACcucuucgaguuCCAGgauGCGGCUCucugGUGGg -3'
miRNA:   3'- -GCGGUCUCUGu----------GGUC---CGCCGGG----CACC- -5'
28811 5' -61.5 NC_006146.1 + 45047 0.66 0.745275
Target:  5'- gGCCGGGGccgGCuCCcuagGGGCGGCUgaggugccuCGUGGg -3'
miRNA:   3'- gCGGUCUC---UGuGG----UCCGCCGG---------GCACC- -5'
28811 5' -61.5 NC_006146.1 + 57348 0.66 0.739738
Target:  5'- gGCCccgggugucggugagGGAGGCugCGgcGGUGGCgCCgGUGGg -3'
miRNA:   3'- gCGG---------------UCUCUGugGU--CCGCCG-GG-CACC- -5'
28811 5' -61.5 NC_006146.1 + 33376 0.66 0.739738
Target:  5'- cCGCCGGGccGCugCcccgcuccgggugggGGGUGGCCCGccUGGg -3'
miRNA:   3'- -GCGGUCUc-UGugG---------------UCCGCCGGGC--ACC- -5'
28811 5' -61.5 NC_006146.1 + 123512 0.66 0.73603
Target:  5'- gGCCAcGGucGACcCCAGGCGGgUCGcGGg -3'
miRNA:   3'- gCGGU-CU--CUGuGGUCCGCCgGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 31809 0.66 0.73603
Target:  5'- aCGCaacccaACuCCAGGCgaGGCCCGUGGc -3'
miRNA:   3'- -GCGgucuc-UGuGGUCCG--CCGGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 128496 0.66 0.73603
Target:  5'- uCGCCuucgaGGAcGGCGuCgGGGUGGCCC-UGGg -3'
miRNA:   3'- -GCGG-----UCU-CUGU-GgUCCGCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 33232 0.66 0.73603
Target:  5'- aGCCGG-GugGCCGccGGCGgGUCCGccGGg -3'
miRNA:   3'- gCGGUCuCugUGGU--CCGC-CGGGCa-CC- -5'
28811 5' -61.5 NC_006146.1 + 50887 0.66 0.73603
Target:  5'- uGcCCGGAcuGGCGCgGGuGCGGCCUG-GGc -3'
miRNA:   3'- gC-GGUCU--CUGUGgUC-CGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 99180 0.66 0.726704
Target:  5'- aGCUcguAGAGcCACCAGGUGGCguCCGccuccagGGa -3'
miRNA:   3'- gCGG---UCUCuGUGGUCCGCCG--GGCa------CC- -5'
28811 5' -61.5 NC_006146.1 + 152152 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5'
28811 5' -61.5 NC_006146.1 + 114602 0.66 0.726704
Target:  5'- gGCCuGGGcCACCucgAGGCGGCgC-UGGa -3'
miRNA:   3'- gCGGuCUCuGUGG---UCCGCCGgGcACC- -5'
28811 5' -61.5 NC_006146.1 + 24096 0.66 0.726704
Target:  5'- uCGCCuGGGACGCgggucgaGGGCGGCUgGcaccGGg -3'
miRNA:   3'- -GCGGuCUCUGUGg------UCCGCCGGgCa---CC- -5'
28811 5' -61.5 NC_006146.1 + 158309 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5'
28811 5' -61.5 NC_006146.1 + 155230 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.