miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 74243 0.66 0.891698
Target:  5'- uCAGGCC-Cu-GCgcggCCGUCUCCCCg -3'
miRNA:   3'- -GUCCGGaGuuUGaggaGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 119315 0.66 0.891698
Target:  5'- -uGGCCccUCuGGCUCCcCCGggCCCCUCc -3'
miRNA:   3'- guCCGG--AGuUUGAGGaGGUa-GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 99245 0.66 0.891698
Target:  5'- --cGUCUCGGGCUUCUUCcUUCCCUCg -3'
miRNA:   3'- gucCGGAGUUUGAGGAGGuAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 47845 0.66 0.891698
Target:  5'- -cGGCuCUCGAGgacccuCUCCUCCAgcgCCCggaCCu -3'
miRNA:   3'- guCCG-GAGUUU------GAGGAGGUa--GGGg--GG- -5'
28823 3' -57.4 NC_006146.1 + 137687 0.66 0.891698
Target:  5'- --aGCCcCAucccGGCUCCcccUCCGgccUCCCCCCg -3'
miRNA:   3'- gucCGGaGU----UUGAGG---AGGU---AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 154898 0.66 0.891698
Target:  5'- aGGGCCUCGcccgGGCUgaCCg-CGUCCgCCCu -3'
miRNA:   3'- gUCCGGAGU----UUGA--GGagGUAGGgGGG- -5'
28823 3' -57.4 NC_006146.1 + 3011 0.66 0.890376
Target:  5'- gGGGCCUUuccaucccugGAGCaaccucaccgcaCCUCCGUgCCCCUa -3'
miRNA:   3'- gUCCGGAG----------UUUGa-----------GGAGGUAgGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 120711 0.66 0.890376
Target:  5'- cCGGGCCUaccCGAGC-CCgCCGcaagugcaaacgCCCCCCu -3'
miRNA:   3'- -GUCCGGA---GUUUGaGGaGGUa-----------GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 101922 0.66 0.887707
Target:  5'- aAGGUUUUggGCUCC-CUAUCagcggcucugcccugCCCCCu -3'
miRNA:   3'- gUCCGGAGuuUGAGGaGGUAG---------------GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 49199 0.66 0.887707
Target:  5'- aGGGCCUCGGAgaCCauggggUCCAggauacggucgaugCCCUCCu -3'
miRNA:   3'- gUCCGGAGUUUgaGG------AGGUa-------------GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 114159 0.66 0.885002
Target:  5'- uCAGGCCcCGGACgUCCcgcgcgaaUUCggCCCCCUg -3'
miRNA:   3'- -GUCCGGaGUUUG-AGG--------AGGuaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 26589 0.66 0.885002
Target:  5'- gAGGCC-CAGuccACUCagccccgugUCCAcugcccaguUCCCCCCa -3'
miRNA:   3'- gUCCGGaGUU---UGAGg--------AGGU---------AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 118006 0.66 0.885002
Target:  5'- -cGGCCgu-AGCUCacggCCGugaccagauucUCCCCCCg -3'
miRNA:   3'- guCCGGaguUUGAGga--GGU-----------AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 116463 0.66 0.885002
Target:  5'- gAGGUCUCGGGCguaaUCUCCGagaCCCUCu -3'
miRNA:   3'- gUCCGGAGUUUGa---GGAGGUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 23511 0.66 0.885002
Target:  5'- gAGGCC-CAGuccACUCagccccgugUCCAcugcccaguUCCCCCCa -3'
miRNA:   3'- gUCCGGaGUU---UGAGg--------AGGU---------AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 18333 0.66 0.885002
Target:  5'- uCGGGCUUCAu-CUCCUUCuuuaaaaaCCCCUu -3'
miRNA:   3'- -GUCCGGAGUuuGAGGAGGuag-----GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 17355 0.66 0.885002
Target:  5'- gAGGCC-CAGuccACUCagccccgugUCCAcugcccaguUCCCCCCa -3'
miRNA:   3'- gUCCGGaGUU---UGAGg--------AGGU---------AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 3276 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 2344 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 1412 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.