Results 1 - 20 of 291 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28823 | 3' | -57.4 | NC_006146.1 | + | 137687 | 0.66 | 0.891698 |
Target: 5'- --aGCCcCAucccGGCUCCcccUCCGgccUCCCCCCg -3' miRNA: 3'- gucCGGaGU----UUGAGG---AGGU---AGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 119315 | 0.66 | 0.891698 |
Target: 5'- -uGGCCccUCuGGCUCCcCCGggCCCCUCc -3' miRNA: 3'- guCCGG--AGuUUGAGGaGGUa-GGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 154898 | 0.66 | 0.891698 |
Target: 5'- aGGGCCUCGcccgGGCUgaCCg-CGUCCgCCCu -3' miRNA: 3'- gUCCGGAGU----UUGA--GGagGUAGGgGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 47845 | 0.66 | 0.891698 |
Target: 5'- -cGGCuCUCGAGgacccuCUCCUCCAgcgCCCggaCCu -3' miRNA: 3'- guCCG-GAGUUU------GAGGAGGUa--GGGg--GG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 74243 | 0.66 | 0.891698 |
Target: 5'- uCAGGCC-Cu-GCgcggCCGUCUCCCCg -3' miRNA: 3'- -GUCCGGaGuuUGaggaGGUAGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 99245 | 0.66 | 0.891698 |
Target: 5'- --cGUCUCGGGCUUCUUCcUUCCCUCg -3' miRNA: 3'- gucCGGAGUUUGAGGAGGuAGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 120711 | 0.66 | 0.890376 |
Target: 5'- cCGGGCCUaccCGAGC-CCgCCGcaagugcaaacgCCCCCCu -3' miRNA: 3'- -GUCCGGA---GUUUGaGGaGGUa-----------GGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 3011 | 0.66 | 0.890376 |
Target: 5'- gGGGCCUUuccaucccugGAGCaaccucaccgcaCCUCCGUgCCCCUa -3' miRNA: 3'- gUCCGGAG----------UUUGa-----------GGAGGUAgGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 49199 | 0.66 | 0.887707 |
Target: 5'- aGGGCCUCGGAgaCCauggggUCCAggauacggucgaugCCCUCCu -3' miRNA: 3'- gUCCGGAGUUUgaGG------AGGUa-------------GGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 101922 | 0.66 | 0.887707 |
Target: 5'- aAGGUUUUggGCUCC-CUAUCagcggcucugcccugCCCCCu -3' miRNA: 3'- gUCCGGAGuuUGAGGaGGUAG---------------GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 114159 | 0.66 | 0.885002 |
Target: 5'- uCAGGCCcCGGACgUCCcgcgcgaaUUCggCCCCCUg -3' miRNA: 3'- -GUCCGGaGUUUG-AGG--------AGGuaGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 481 | 0.66 | 0.885002 |
Target: 5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3' miRNA: 3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 2344 | 0.66 | 0.885002 |
Target: 5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3' miRNA: 3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 3276 | 0.66 | 0.885002 |
Target: 5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3' miRNA: 3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 18333 | 0.66 | 0.885002 |
Target: 5'- uCGGGCUUCAu-CUCCUUCuuuaaaaaCCCCUu -3' miRNA: 3'- -GUCCGGAGUuuGAGGAGGuag-----GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 118006 | 0.66 | 0.885002 |
Target: 5'- -cGGCCgu-AGCUCacggCCGugaccagauucUCCCCCCg -3' miRNA: 3'- guCCGGaguUUGAGga--GGU-----------AGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 116463 | 0.66 | 0.885002 |
Target: 5'- gAGGUCUCGGGCguaaUCUCCGagaCCCUCu -3' miRNA: 3'- gUCCGGAGUUUGa---GGAGGUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 14277 | 0.66 | 0.885002 |
Target: 5'- gAGGCC-CAGuccACUCagccccgugUCCAcugcccaguUCCCCCCa -3' miRNA: 3'- gUCCGGaGUU---UGAGg--------AGGU---------AGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 17355 | 0.66 | 0.885002 |
Target: 5'- gAGGCC-CAGuccACUCagccccgugUCCAcugcccaguUCCCCCCa -3' miRNA: 3'- gUCCGGaGUU---UGAGg--------AGGU---------AGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 23511 | 0.66 | 0.885002 |
Target: 5'- gAGGCC-CAGuccACUCagccccgugUCCAcugcccaguUCCCCCCa -3' miRNA: 3'- gUCCGGaGUU---UGAGg--------AGGU---------AGGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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