miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 5' -63.3 NC_006146.1 + 137749 0.66 0.633275
Target:  5'- uGCCcagCCGGGccaccccccacccgGAgcgGGGCAGCGGCCCg-- -3'
miRNA:   3'- -CGGa--GGCCC--------------CU---CCUGUCGUCGGGguc -5'
28827 5' -63.3 NC_006146.1 + 54210 0.66 0.633275
Target:  5'- gGUCUCCgcaucguacaggauGGGGcGGGAgCagagccucugGGCGGCCCCGGu -3'
miRNA:   3'- -CGGAGG--------------CCCC-UCCU-G----------UCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 45038 0.66 0.626487
Target:  5'- gGCCUUCGaGGAGGGCcucGCgGGCCUUGGg -3'
miRNA:   3'- -CGGAGGCcCCUCCUGu--CG-UCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 14199 0.66 0.626487
Target:  5'- aGCCUggaCGGGGAGG-CGGUGGCgCgCAa -3'
miRNA:   3'- -CGGAg--GCCCCUCCuGUCGUCG-GgGUc -5'
28827 5' -63.3 NC_006146.1 + 137626 0.66 0.623579
Target:  5'- uGCCcagCCGGgccaccccccacccGGAgcgGGGCAGCGGCCCggCGGa -3'
miRNA:   3'- -CGGa--GGCC--------------CCU---CCUGUCGUCGGG--GUC- -5'
28827 5' -63.3 NC_006146.1 + 141537 0.66 0.620671
Target:  5'- gGCUgguUCUGGGGcuggacuuGGGACAGUgagcucaggagccggGGCCUCGGg -3'
miRNA:   3'- -CGG---AGGCCCC--------UCCUGUCG---------------UCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 144615 0.66 0.620671
Target:  5'- gGCUgguUCUGGGGcuggacuuGGGACAGUgagcucaggagccggGGCCUCGGg -3'
miRNA:   3'- -CGG---AGGCCCC--------UCCUGUCG---------------UCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 150770 0.66 0.620671
Target:  5'- gGCUgguUCUGGGGcuggacuuGGGACAGUgagcucaggagccggGGCCUCGGg -3'
miRNA:   3'- -CGG---AGGCCCC--------UCCUGUCG---------------UCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 153848 0.66 0.620671
Target:  5'- gGCUgguUCUGGGGcuggacuuGGGACAGUgagcucaggagccggGGCCUCGGg -3'
miRNA:   3'- -CGG---AGGCCCC--------UCCUGUCG---------------UCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 156926 0.66 0.620671
Target:  5'- gGCUgguUCUGGGGcuggacuuGGGACAGUgagcucaggagccggGGCCUCGGg -3'
miRNA:   3'- -CGG---AGGCCCC--------UCCUGUCG---------------UCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 81786 0.66 0.616794
Target:  5'- gGUCUCCGGGGGugccaccuGG--GGCAGUgCCGGu -3'
miRNA:   3'- -CGGAGGCCCCU--------CCugUCGUCGgGGUC- -5'
28827 5' -63.3 NC_006146.1 + 24092 0.66 0.616794
Target:  5'- gGCCUCgccugggacgCGGGucGAGGGCGGCuGGCaCCGGg -3'
miRNA:   3'- -CGGAG----------GCCC--CUCCUGUCG-UCGgGGUC- -5'
28827 5' -63.3 NC_006146.1 + 24039 0.66 0.616794
Target:  5'- cCCcCUGGcGGGGuGAC-GCGGCCCCGa -3'
miRNA:   3'- cGGaGGCC-CCUC-CUGuCGUCGGGGUc -5'
28827 5' -63.3 NC_006146.1 + 9134 0.66 0.613888
Target:  5'- gGUCUCCcacGGGGcguugccucuuucgGGGACGGCgGGCuCCCAc -3'
miRNA:   3'- -CGGAGG---CCCC--------------UCCUGUCG-UCG-GGGUc -5'
28827 5' -63.3 NC_006146.1 + 84840 0.66 0.610983
Target:  5'- uGCCccuugauccagaagCUGGaGGAGccgacggaGACAGCGGCUCCAGu -3'
miRNA:   3'- -CGGa-------------GGCC-CCUC--------CUGUCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35452 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35545 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35638 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35731 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 40075 0.66 0.607111
Target:  5'- cGUCUcCCGGcGGAGGGCcuGCAGCgCguGc -3'
miRNA:   3'- -CGGA-GGCC-CCUCCUGu-CGUCGgGguC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.