miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 3' -61.4 NC_006146.1 + 123281 0.66 0.726616
Target:  5'- cGGCUCgugGCCCuaucggcgauCCCuGGCGGcCGCCg -3'
miRNA:   3'- cCCGAG---CGGGu---------GGGuCUGUCuGCGGa -5'
28829 3' -61.4 NC_006146.1 + 122774 0.66 0.726616
Target:  5'- gGGGCUgGCCgaACUCcaagagaagAGACGGGCgGCCg -3'
miRNA:   3'- -CCCGAgCGGg-UGGG---------UCUGUCUG-CGGa -5'
28829 3' -61.4 NC_006146.1 + 116877 0.66 0.726616
Target:  5'- uGGC-CGCCC-UCCGGA--GGCGCCa -3'
miRNA:   3'- cCCGaGCGGGuGGGUCUguCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 33124 0.66 0.726616
Target:  5'- cGGCggaccagGCCCACCCGGAcCGGACcaGCg- -3'
miRNA:   3'- cCCGag-----CGGGUGGGUCU-GUCUG--CGga -5'
28829 3' -61.4 NC_006146.1 + 9881 0.66 0.726616
Target:  5'- cGGCcCGCUCACCCacaaAGGCGguGACgGCCa -3'
miRNA:   3'- cCCGaGCGGGUGGG----UCUGU--CUG-CGGa -5'
28829 3' -61.4 NC_006146.1 + 55712 0.66 0.726616
Target:  5'- gGGGCUCuGCCCGCCgCuGGCcuccgcguacACGCCc -3'
miRNA:   3'- -CCCGAG-CGGGUGG-GuCUGuc--------UGCGGa -5'
28829 3' -61.4 NC_006146.1 + 123816 0.66 0.726616
Target:  5'- cGGCgcaGCCCACCgucuucguCAGGCGCCc -3'
miRNA:   3'- cCCGag-CGGGUGGgucu----GUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 132623 0.66 0.723782
Target:  5'- aGGGCcggcagugUgGCCCGCuCCAGAUGuuccaggcacacacGGCGCCg -3'
miRNA:   3'- -CCCG--------AgCGGGUG-GGUCUGU--------------CUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 148243 0.66 0.717144
Target:  5'- cGGCUgGCCUgggACCCGGGgAGGCaCCc -3'
miRNA:   3'- cCCGAgCGGG---UGGGUCUgUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 85948 0.66 0.717144
Target:  5'- cGGGacuUUGCCCccCCCAaGCgAGGCGCCUc -3'
miRNA:   3'- -CCCg--AGCGGGu-GGGUcUG-UCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 13775 0.66 0.717144
Target:  5'- uGGGCgaggCGUgCGCCUcgcugacucuGGAC-GACGCCg -3'
miRNA:   3'- -CCCGa---GCGgGUGGG----------UCUGuCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 22358 0.66 0.717144
Target:  5'- cGGCca--CCACCCAucauGGCAGugGCCa -3'
miRNA:   3'- cCCGagcgGGUGGGU----CUGUCugCGGa -5'
28829 3' -61.4 NC_006146.1 + 126136 0.66 0.717144
Target:  5'- uGGGUUcccCGCCCGCCgGGccccgacaaccACAGcCGCCc -3'
miRNA:   3'- -CCCGA---GCGGGUGGgUC-----------UGUCuGCGGa -5'
28829 3' -61.4 NC_006146.1 + 142087 0.66 0.717144
Target:  5'- cGGCUgGCCUgggACCCGGGgAGGCaCCc -3'
miRNA:   3'- cCCGAgCGGG---UGGGUCUgUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 145165 0.66 0.717144
Target:  5'- cGGCUgGCCUgggACCCGGGgAGGCaCCc -3'
miRNA:   3'- cCCGAgCGGG---UGGGUCUgUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 151321 0.66 0.717144
Target:  5'- cGGCUgGCCUgggACCCGGGgAGGCaCCc -3'
miRNA:   3'- cCCGAgCGGG---UGGGUCUgUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 154399 0.66 0.717144
Target:  5'- cGGCUgGCCUgggACCCGGGgAGGCaCCc -3'
miRNA:   3'- cCCGAgCGGG---UGGGUCUgUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 157477 0.66 0.717144
Target:  5'- cGGCUgGCCUgggACCCGGGgAGGCaCCc -3'
miRNA:   3'- cCCGAgCGGG---UGGGUCUgUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 55604 0.66 0.713337
Target:  5'- gGGGCUUaucuaugaccacuCCCGCCCGGAU-GcCGCCUa -3'
miRNA:   3'- -CCCGAGc------------GGGUGGGUCUGuCuGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 5143 0.66 0.707607
Target:  5'- -cGCUCaCCCGCCCuGcgAGACGCCc -3'
miRNA:   3'- ccCGAGcGGGUGGGuCugUCUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.