Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28832 | 3' | -58.9 | NC_006146.1 | + | 144017 | 0.66 | 0.808536 |
Target: 5'- aGcCGGGCGaCCCGgCGCUcUUCUUCa -3' miRNA: 3'- gC-GUCCGUgGGGCgGCGGuAAGAAGg -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 141655 | 0.7 | 0.618233 |
Target: 5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3' miRNA: 3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 138035 | 0.72 | 0.482975 |
Target: 5'- gGCAGGgACCUcgCGCCGCCcg-CUUCa -3' miRNA: 3'- gCGUCCgUGGG--GCGGCGGuaaGAAGg -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 131225 | 0.7 | 0.596418 |
Target: 5'- uGCAGGCccaggAgCCCGCCGCCuccaaggCCa -3' miRNA: 3'- gCGUCCG-----UgGGGCGGCGGuaagaa-GG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 131182 | 0.7 | 0.568833 |
Target: 5'- cCG-AGGC-CCCCGuuGCC-UUCUUCg -3' miRNA: 3'- -GCgUCCGuGGGGCggCGGuAAGAAGg -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 129127 | 0.7 | 0.608307 |
Target: 5'- aGCGGGCGCCCgGgCGCagggCcUCCg -3' miRNA: 3'- gCGUCCGUGGGgCgGCGguaaGaAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 128833 | 0.66 | 0.808536 |
Target: 5'- aGgGGGuCACCCUGUCGCgAaUCUcCCu -3' miRNA: 3'- gCgUCC-GUGGGGCGGCGgUaAGAaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 128600 | 0.67 | 0.773206 |
Target: 5'- uCGCAgGGCACUCCGgcucCCGCUccUCcUCCc -3' miRNA: 3'- -GCGU-CCGUGGGGC----GGCGGuaAGaAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 128200 | 0.66 | 0.833478 |
Target: 5'- gGgGGGCGCCgCGgCGCCGggccagacgcUCUUUCg -3' miRNA: 3'- gCgUCCGUGGgGCgGCGGUa---------AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 127915 | 0.67 | 0.764057 |
Target: 5'- uGCGGGCGCCgggCUGCUGCCcacaaacUCCg -3' miRNA: 3'- gCGUCCGUGG---GGCGGCGGuaaga--AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 127841 | 0.73 | 0.438028 |
Target: 5'- uCGCuGGCACCCCucaaCCGCCAggCggcguaUCCg -3' miRNA: 3'- -GCGuCCGUGGGGc---GGCGGUaaGa-----AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 127626 | 0.66 | 0.817011 |
Target: 5'- gGC-GGCACCgccggcCCGCUGCC--UCUugUCCa -3' miRNA: 3'- gCGuCCGUGG------GGCGGCGGuaAGA--AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 127403 | 0.71 | 0.520472 |
Target: 5'- --gGGGCuggGCCCCGCCGCCGgag--CCg -3' miRNA: 3'- gcgUCCG---UGGGGCGGCGGUaagaaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 127272 | 0.77 | 0.260159 |
Target: 5'- gGCGGccaCGCCCCGCCGCCcacucccUCUUCCc -3' miRNA: 3'- gCGUCc--GUGGGGCGGCGGua-----AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 126652 | 0.66 | 0.825327 |
Target: 5'- cCGCAGGgGCaauggacaCCGCCGCCcgg---CCa -3' miRNA: 3'- -GCGUCCgUGg-------GGCGGCGGuaagaaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 126200 | 0.67 | 0.790257 |
Target: 5'- aGCGGGgGCCacggccaCCGCCGCCAcaccggcaucaUCgUCCg -3' miRNA: 3'- gCGUCCgUGG-------GGCGGCGGUa----------AGaAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 125753 | 0.84 | 0.092326 |
Target: 5'- aGCGGGCuuGCCCuUGCUGCCAUUCUUCUg -3' miRNA: 3'- gCGUCCG--UGGG-GCGGCGGUAAGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 124448 | 0.67 | 0.764056 |
Target: 5'- gGCAcGCAUCCggccuaCGCCGCCGc-CUUCCu -3' miRNA: 3'- gCGUcCGUGGG------GCGGCGGUaaGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 123960 | 0.72 | 0.490373 |
Target: 5'- aCGCGGGCACCCUGUgGCUGgagaccgagUCCc -3' miRNA: 3'- -GCGUCCGUGGGGCGgCGGUaaga-----AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 123379 | 0.66 | 0.79904 |
Target: 5'- gGC-GGCGCCCCcgacacuGCCGCUGUag-UCCc -3' miRNA: 3'- gCGuCCGUGGGG-------CGGCGGUAagaAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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