miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28836 5' -51.7 NC_006146.1 + 123932 0.66 0.990606
Target:  5'- uUCCUGGcggcGGCCgggccggcgaaaUACGCGGGCAc-- -3'
miRNA:   3'- gAGGACCuu--UCGG------------AUGCGUCUGUugu -5'
28836 5' -51.7 NC_006146.1 + 128561 0.66 0.990606
Target:  5'- aUCCUGGAGcggcaguucgcGGCCU---CGGACGACu -3'
miRNA:   3'- gAGGACCUU-----------UCGGAugcGUCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 116910 0.66 0.989281
Target:  5'- -cCCUgagGGAAAGCCgggggauCGCAGACcACc -3'
miRNA:   3'- gaGGA---CCUUUCGGau-----GCGUCUGuUGu -5'
28836 5' -51.7 NC_006146.1 + 140225 0.66 0.987813
Target:  5'- ----cGGAcaGGGCCUGgGUGGACAGCGu -3'
miRNA:   3'- gaggaCCU--UUCGGAUgCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 118047 0.66 0.986195
Target:  5'- -aCCUGGA--GCCcccggGCGgGGGCGGCGg -3'
miRNA:   3'- gaGGACCUuuCGGa----UGCgUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 124224 0.66 0.986195
Target:  5'- aCUCCUGGuccgacgugGAGGCCaACGcCGGGgAACu -3'
miRNA:   3'- -GAGGACC---------UUUCGGaUGC-GUCUgUUGu -5'
28836 5' -51.7 NC_006146.1 + 69857 0.66 0.986195
Target:  5'- -cCCUGGGAGGUCggGCGUAGAgGc-- -3'
miRNA:   3'- gaGGACCUUUCGGa-UGCGUCUgUugu -5'
28836 5' -51.7 NC_006146.1 + 153694 0.66 0.986195
Target:  5'- gUCCUGGAGGGCCU-CGUAcuucucguGCAugGu -3'
miRNA:   3'- gAGGACCUUUCGGAuGCGUc-------UGUugU- -5'
28836 5' -51.7 NC_006146.1 + 40077 0.66 0.986195
Target:  5'- uCUCCcggcGGAGGGCCUgcaGCGCGuGCuGCAg -3'
miRNA:   3'- -GAGGa---CCUUUCGGA---UGCGUcUGuUGU- -5'
28836 5' -51.7 NC_006146.1 + 47321 0.66 0.984418
Target:  5'- cCUCCUGGAugauGGCCUccaGC-CGGGCcaGGCGc -3'
miRNA:   3'- -GAGGACCUu---UCGGA---UGcGUCUG--UUGU- -5'
28836 5' -51.7 NC_006146.1 + 158332 0.66 0.984418
Target:  5'- gUCCUGGAGgauGGUCa--GCAGAgAGCGa -3'
miRNA:   3'- gAGGACCUU---UCGGaugCGUCUgUUGU- -5'
28836 5' -51.7 NC_006146.1 + 74760 0.67 0.982471
Target:  5'- cCUCC-GGggGGCCaagACGCAGGa---- -3'
miRNA:   3'- -GAGGaCCuuUCGGa--UGCGUCUguugu -5'
28836 5' -51.7 NC_006146.1 + 16197 0.67 0.982471
Target:  5'- -cCCUGGugGGCUgcaucuggGCGCAGACcacccAGCAg -3'
miRNA:   3'- gaGGACCuuUCGGa-------UGCGUCUG-----UUGU- -5'
28836 5' -51.7 NC_006146.1 + 13219 0.67 0.982471
Target:  5'- aUCCU-GAAGGCCUGCGgcCAGACc--- -3'
miRNA:   3'- gAGGAcCUUUCGGAUGC--GUCUGuugu -5'
28836 5' -51.7 NC_006146.1 + 121408 0.67 0.980347
Target:  5'- gUCCgGGAGAGUCUGCcCAuGAcCAACAu -3'
miRNA:   3'- gAGGaCCUUUCGGAUGcGU-CU-GUUGU- -5'
28836 5' -51.7 NC_006146.1 + 67078 0.67 0.978037
Target:  5'- uCUCCcagguuuggUGGcGGAGCuCUugGCAGACGAg- -3'
miRNA:   3'- -GAGG---------ACC-UUUCG-GAugCGUCUGUUgu -5'
28836 5' -51.7 NC_006146.1 + 154609 0.67 0.975532
Target:  5'- --gCUGGAGAGCU--CGCAGACG-CGg -3'
miRNA:   3'- gagGACCUUUCGGauGCGUCUGUuGU- -5'
28836 5' -51.7 NC_006146.1 + 93390 0.67 0.972825
Target:  5'- uUCCUGuGGuuGCCgaaGCAGAUGGCGa -3'
miRNA:   3'- gAGGAC-CUuuCGGaugCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 166532 0.67 0.972825
Target:  5'- -gCCUGGGGAGCCcGCGgGGcCGugGc -3'
miRNA:   3'- gaGGACCUUUCGGaUGCgUCuGUugU- -5'
28836 5' -51.7 NC_006146.1 + 72559 0.67 0.972258
Target:  5'- uCUCCUGGAccgggacGGGCC-GCGCccggccccgugccAGACGGCc -3'
miRNA:   3'- -GAGGACCU-------UUCGGaUGCG-------------UCUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.