miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 116819 0.66 0.893906
Target:  5'- gGCGUCC-AGGAcgUGuGcCGGGACGcGGCg -3'
miRNA:   3'- -UGCAGGcUCCU--ACcC-GUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 94902 0.66 0.891946
Target:  5'- gGCGUCUGucuGGGUGGGCGaGcccacgcagacgauGCAGGGg -3'
miRNA:   3'- -UGCAGGCu--CCUACCCGUcC--------------UGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 147590 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 89016 0.66 0.887293
Target:  5'- cACGgagccugCCGuGGAuguUGGGUcugAGGcCGAGGCu -3'
miRNA:   3'- -UGCa------GGCuCCU---ACCCG---UCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 141434 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 144512 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 150668 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 153745 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 156823 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 141479 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 144557 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 147635 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 150712 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 153790 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 156868 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 158554 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 155475 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 152397 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 149319 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 146241 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.